Hb_001267_020

Information

Type -
Description -
Location Contig1267: 53599-59350
Sequence    

Annotation

kegg
ID pmum:103332224
description uncharacterized LOC103332224
nr
ID XP_012073065.1
description PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
swissprot
ID Q6XKE6
description Genome polyprotein OS=Petunia vein clearing virus (isolate Hohn) PE=3 SV=1
trembl
ID A0A022PPM0
description Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a021562mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description PREDICTED: uncharacterized protein LOC105634770

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001267_020 0.0 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
2 Hb_000138_180 0.0391648007 - - PREDICTED: uncharacterized protein LOC105131773 [Populus euphratica]
3 Hb_006616_070 0.0745308914 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
4 Hb_006827_010 0.0777465199 - - retrotransposon protein, putative, unclassified, expressed [Oryza sativa Japonica Group]
5 Hb_002474_020 0.0961963798 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104585652 [Nelumbo nucifera]
6 Hb_000450_110 0.1190220181 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
7 Hb_000247_060 0.1410019415 transcription factor TF Family: bHLH PREDICTED: transcription factor ORG2-like isoform X1 [Jatropha curcas]
8 Hb_004643_020 0.1697641452 - - hypothetical protein AMTR_s05716p00004100, partial [Amborella trichopoda]
9 Hb_149345_010 0.1705283949 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
10 Hb_002990_020 0.1747153597 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
11 Hb_147604_010 0.1751757061 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
12 Hb_001300_090 0.1766200524 - - PREDICTED: glutaredoxin-C11 [Jatropha curcas]
13 Hb_009004_020 0.1782717145 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
14 Hb_004291_060 0.1794595489 - - hypothetical protein F775_42457 [Aegilops tauschii]
15 Hb_002471_280 0.1838922911 - - PREDICTED: cyclin-SDS [Jatropha curcas]
16 Hb_002764_020 0.1847176627 - - hypothetical protein JCGZ_24084 [Jatropha curcas]
17 Hb_002598_030 0.1851443465 - - -
18 Hb_089305_040 0.1867109306 - - -
19 Hb_167136_010 0.1883609347 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
20 Hb_001542_010 0.191879569 - - hypothetical protein, partial [Pseudomonas fluorescens]

Gene co-expression network

sample Hb_001267_020 Hb_001267_020 Hb_000138_180 Hb_000138_180 Hb_001267_020--Hb_000138_180 Hb_006616_070 Hb_006616_070 Hb_001267_020--Hb_006616_070 Hb_006827_010 Hb_006827_010 Hb_001267_020--Hb_006827_010 Hb_002474_020 Hb_002474_020 Hb_001267_020--Hb_002474_020 Hb_000450_110 Hb_000450_110 Hb_001267_020--Hb_000450_110 Hb_000247_060 Hb_000247_060 Hb_001267_020--Hb_000247_060 Hb_000138_180--Hb_006827_010 Hb_000138_180--Hb_006616_070 Hb_000138_180--Hb_002474_020 Hb_000138_180--Hb_000450_110 Hb_004643_020 Hb_004643_020 Hb_000138_180--Hb_004643_020 Hb_006616_070--Hb_006827_010 Hb_006616_070--Hb_000450_110 Hb_001300_090 Hb_001300_090 Hb_006616_070--Hb_001300_090 Hb_006616_070--Hb_000247_060 Hb_006827_010--Hb_001300_090 Hb_006827_010--Hb_004643_020 Hb_002990_020 Hb_002990_020 Hb_006827_010--Hb_002990_020 Hb_004291_060 Hb_004291_060 Hb_002474_020--Hb_004291_060 Hb_003559_010 Hb_003559_010 Hb_002474_020--Hb_003559_010 Hb_002474_020--Hb_000247_060 Hb_002474_020--Hb_000450_110 Hb_000450_110--Hb_000247_060 Hb_009004_020 Hb_009004_020 Hb_000450_110--Hb_009004_020 Hb_002395_040 Hb_002395_040 Hb_000450_110--Hb_002395_040 Hb_000247_060--Hb_009004_020 Hb_000758_060 Hb_000758_060 Hb_000247_060--Hb_000758_060 Hb_003882_030 Hb_003882_030 Hb_000247_060--Hb_003882_030 Hb_002874_250 Hb_002874_250 Hb_000247_060--Hb_002874_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00642697 0 0.00531792 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0449181

CAGE analysis