Hb_004643_020

Information

Type -
Description -
Location Contig4643: 19909-26165
Sequence    

Annotation

kegg
ID atr:s05716p00004100
description AMTR_s05716p00004100; hypothetical protein
nr
ID ERM93378.1
description hypothetical protein AMTR_s05716p00004100, partial [Amborella trichopoda]
swissprot
ID -
description -
trembl
ID U5CTW6
description Uncharacterized protein (Fragment) OS=Amborella trichopoda GN=AMTR_s05716p00004100 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004643_020 0.0 - - hypothetical protein AMTR_s05716p00004100, partial [Amborella trichopoda]
2 Hb_003796_010 0.0820692474 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
3 Hb_089305_040 0.1032174063 - - -
4 Hb_004951_030 0.1182942423 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
5 Hb_001300_090 0.1252684641 - - PREDICTED: glutaredoxin-C11 [Jatropha curcas]
6 Hb_002990_020 0.1272824378 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
7 Hb_009393_110 0.1278622503 - - PREDICTED: circadian locomoter output cycles protein kaput [Jatropha curcas]
8 Hb_119832_010 0.1357831536 - - -
9 Hb_018105_010 0.1390592199 - - hypothetical protein POPTR_0004s08710g [Populus trichocarpa]
10 Hb_029510_060 0.1453174218 - - PREDICTED: probable plastidic glucose transporter 3 [Jatropha curcas]
11 Hb_000138_180 0.1469262897 - - PREDICTED: uncharacterized protein LOC105131773 [Populus euphratica]
12 Hb_006827_010 0.1482029296 - - retrotransposon protein, putative, unclassified, expressed [Oryza sativa Japonica Group]
13 Hb_004372_050 0.1499106135 - - putative receptor-like protein kinase [Morus notabilis]
14 Hb_000672_130 0.1518851939 - - hypothetical protein POPTR_0010s22870g [Populus trichocarpa]
15 Hb_167136_010 0.158060137 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
16 Hb_000951_070 0.1650497612 - - PREDICTED: LOW QUALITY PROTEIN: receptor-like protein kinase FERONIA [Populus euphratica]
17 Hb_001267_020 0.1697641452 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
18 Hb_006616_070 0.1736765109 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
19 Hb_000311_110 0.1781431744 - - ATP-binding cassette transporter, putative [Ricinus communis]
20 Hb_149345_010 0.1824332279 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004643_020 Hb_004643_020 Hb_003796_010 Hb_003796_010 Hb_004643_020--Hb_003796_010 Hb_089305_040 Hb_089305_040 Hb_004643_020--Hb_089305_040 Hb_004951_030 Hb_004951_030 Hb_004643_020--Hb_004951_030 Hb_001300_090 Hb_001300_090 Hb_004643_020--Hb_001300_090 Hb_002990_020 Hb_002990_020 Hb_004643_020--Hb_002990_020 Hb_009393_110 Hb_009393_110 Hb_004643_020--Hb_009393_110 Hb_003796_010--Hb_089305_040 Hb_003796_010--Hb_004951_030 Hb_003796_010--Hb_009393_110 Hb_000951_070 Hb_000951_070 Hb_003796_010--Hb_000951_070 Hb_119832_010 Hb_119832_010 Hb_003796_010--Hb_119832_010 Hb_089305_040--Hb_000951_070 Hb_001459_020 Hb_001459_020 Hb_089305_040--Hb_001459_020 Hb_089305_040--Hb_009393_110 Hb_089305_040--Hb_004951_030 Hb_004951_030--Hb_009393_110 Hb_004951_030--Hb_119832_010 Hb_018105_010 Hb_018105_010 Hb_004951_030--Hb_018105_010 Hb_008225_020 Hb_008225_020 Hb_004951_030--Hb_008225_020 Hb_000208_220 Hb_000208_220 Hb_001300_090--Hb_000208_220 Hb_000672_130 Hb_000672_130 Hb_001300_090--Hb_000672_130 Hb_001300_090--Hb_003796_010 Hb_006827_010 Hb_006827_010 Hb_001300_090--Hb_006827_010 Hb_029510_060 Hb_029510_060 Hb_001300_090--Hb_029510_060 Hb_004372_050 Hb_004372_050 Hb_002990_020--Hb_004372_050 Hb_167136_010 Hb_167136_010 Hb_002990_020--Hb_167136_010 Hb_000138_180 Hb_000138_180 Hb_002990_020--Hb_000138_180 Hb_002990_020--Hb_006827_010 Hb_002471_280 Hb_002471_280 Hb_002990_020--Hb_002471_280 Hb_009393_110--Hb_008225_020 Hb_009393_110--Hb_119832_010 Hb_000311_110 Hb_000311_110 Hb_009393_110--Hb_000311_110 Hb_009393_110--Hb_000951_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.170004 0.0230862 0.0576354 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.554695

CAGE analysis