Hb_167136_010

Information

Type -
Description -
Location Contig167136: 4351-12245
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa018734mg
description hypothetical protein
nr
ID XP_012086129.1
description PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID A0A067JPZ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21064 PE=4 SV=1
Gene Ontology
ID GO:0005515
description disease resistance protein rga3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_167136_010 0.0 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
2 Hb_002471_280 0.0740201082 - - PREDICTED: cyclin-SDS [Jatropha curcas]
3 Hb_009785_020 0.1210626726 - - PREDICTED: nucleolin [Populus euphratica]
4 Hb_004372_050 0.1214620028 - - putative receptor-like protein kinase [Morus notabilis]
5 Hb_002990_020 0.126861114 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
6 Hb_004643_020 0.158060137 - - hypothetical protein AMTR_s05716p00004100, partial [Amborella trichopoda]
7 Hb_000138_180 0.1658728168 - - PREDICTED: uncharacterized protein LOC105131773 [Populus euphratica]
8 Hb_006827_010 0.1851970913 - - retrotransposon protein, putative, unclassified, expressed [Oryza sativa Japonica Group]
9 Hb_001267_020 0.1883609347 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
10 Hb_012691_060 0.1981194163 - - PREDICTED: isoflavone 2'-hydroxylase-like isoform X1 [Prunus mume]
11 Hb_018105_010 0.1996689431 - - hypothetical protein POPTR_0004s08710g [Populus trichocarpa]
12 Hb_089305_040 0.2097733749 - - -
13 Hb_003796_010 0.2174811091 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
14 Hb_006616_070 0.2205596788 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
15 Hb_149345_010 0.2244814877 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
16 Hb_037519_010 0.227426277 - - PREDICTED: auxin-induced in root cultures protein 12-like [Jatropha curcas]
17 Hb_010863_070 0.2302209401 - - PREDICTED: glutaredoxin-C11 [Jatropha curcas]
18 Hb_000269_040 0.2323720187 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_002973_130 0.2334175177 - - PREDICTED: uncharacterized protein LOC104609908 [Nelumbo nucifera]
20 Hb_009393_110 0.2337573562 - - PREDICTED: circadian locomoter output cycles protein kaput [Jatropha curcas]

Gene co-expression network

sample Hb_167136_010 Hb_167136_010 Hb_002471_280 Hb_002471_280 Hb_167136_010--Hb_002471_280 Hb_009785_020 Hb_009785_020 Hb_167136_010--Hb_009785_020 Hb_004372_050 Hb_004372_050 Hb_167136_010--Hb_004372_050 Hb_002990_020 Hb_002990_020 Hb_167136_010--Hb_002990_020 Hb_004643_020 Hb_004643_020 Hb_167136_010--Hb_004643_020 Hb_000138_180 Hb_000138_180 Hb_167136_010--Hb_000138_180 Hb_012691_060 Hb_012691_060 Hb_002471_280--Hb_012691_060 Hb_002471_280--Hb_004372_050 Hb_002471_280--Hb_002990_020 Hb_002471_280--Hb_000138_180 Hb_043127_010 Hb_043127_010 Hb_002471_280--Hb_043127_010 Hb_009785_020--Hb_004372_050 Hb_009785_020--Hb_002990_020 Hb_009785_020--Hb_002471_280 Hb_002890_350 Hb_002890_350 Hb_009785_020--Hb_002890_350 Hb_004566_050 Hb_004566_050 Hb_009785_020--Hb_004566_050 Hb_004372_050--Hb_002990_020 Hb_000289_090 Hb_000289_090 Hb_004372_050--Hb_000289_090 Hb_010863_070 Hb_010863_070 Hb_004372_050--Hb_010863_070 Hb_004372_050--Hb_004643_020 Hb_002990_020--Hb_004643_020 Hb_002990_020--Hb_000138_180 Hb_006827_010 Hb_006827_010 Hb_002990_020--Hb_006827_010 Hb_003796_010 Hb_003796_010 Hb_004643_020--Hb_003796_010 Hb_089305_040 Hb_089305_040 Hb_004643_020--Hb_089305_040 Hb_004951_030 Hb_004951_030 Hb_004643_020--Hb_004951_030 Hb_001300_090 Hb_001300_090 Hb_004643_020--Hb_001300_090 Hb_009393_110 Hb_009393_110 Hb_004643_020--Hb_009393_110 Hb_001267_020 Hb_001267_020 Hb_000138_180--Hb_001267_020 Hb_000138_180--Hb_006827_010 Hb_006616_070 Hb_006616_070 Hb_000138_180--Hb_006616_070 Hb_002474_020 Hb_002474_020 Hb_000138_180--Hb_002474_020 Hb_000450_110 Hb_000450_110 Hb_000138_180--Hb_000450_110 Hb_000138_180--Hb_004643_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0355934 0 0.0167536 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0788552

CAGE analysis