Hb_000138_180

Information

Type -
Description -
Location Contig138: 325259-325868
Sequence    

Annotation

kegg
ID pop:POPTR_0006s20650g
description POPTRDRAFT_561257; hypothetical protein
nr
ID XP_011033217.1
description PREDICTED: uncharacterized protein LOC105131773 [Populus euphratica]
swissprot
ID O48522
description VQ motif-containing protein 17 OS=Arabidopsis thaliana GN=VQ17 PE=2 SV=1
trembl
ID B9HAC3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s20650g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000138_180 0.0 - - PREDICTED: uncharacterized protein LOC105131773 [Populus euphratica]
2 Hb_001267_020 0.0391648007 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
3 Hb_006827_010 0.0464275592 - - retrotransposon protein, putative, unclassified, expressed [Oryza sativa Japonica Group]
4 Hb_006616_070 0.0629122398 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
5 Hb_002474_020 0.1333102205 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104585652 [Nelumbo nucifera]
6 Hb_000450_110 0.1456615846 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
7 Hb_004643_020 0.1469262897 - - hypothetical protein AMTR_s05716p00004100, partial [Amborella trichopoda]
8 Hb_002990_020 0.1478832991 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
9 Hb_001300_090 0.1607626454 - - PREDICTED: glutaredoxin-C11 [Jatropha curcas]
10 Hb_167136_010 0.1658728168 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
11 Hb_000247_060 0.1729874114 transcription factor TF Family: bHLH PREDICTED: transcription factor ORG2-like isoform X1 [Jatropha curcas]
12 Hb_002471_280 0.1755543002 - - PREDICTED: cyclin-SDS [Jatropha curcas]
13 Hb_149345_010 0.1774147384 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
14 Hb_147604_010 0.1787711204 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
15 Hb_002598_030 0.1827953175 - - -
16 Hb_089305_040 0.18383272 - - -
17 Hb_000672_130 0.184598799 - - hypothetical protein POPTR_0010s22870g [Populus trichocarpa]
18 Hb_003796_010 0.1957008445 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
19 Hb_001542_010 0.195780569 - - hypothetical protein, partial [Pseudomonas fluorescens]
20 Hb_008680_010 0.2018131977 - - -

Gene co-expression network

sample Hb_000138_180 Hb_000138_180 Hb_001267_020 Hb_001267_020 Hb_000138_180--Hb_001267_020 Hb_006827_010 Hb_006827_010 Hb_000138_180--Hb_006827_010 Hb_006616_070 Hb_006616_070 Hb_000138_180--Hb_006616_070 Hb_002474_020 Hb_002474_020 Hb_000138_180--Hb_002474_020 Hb_000450_110 Hb_000450_110 Hb_000138_180--Hb_000450_110 Hb_004643_020 Hb_004643_020 Hb_000138_180--Hb_004643_020 Hb_001267_020--Hb_006616_070 Hb_001267_020--Hb_006827_010 Hb_001267_020--Hb_002474_020 Hb_001267_020--Hb_000450_110 Hb_000247_060 Hb_000247_060 Hb_001267_020--Hb_000247_060 Hb_006827_010--Hb_006616_070 Hb_001300_090 Hb_001300_090 Hb_006827_010--Hb_001300_090 Hb_006827_010--Hb_004643_020 Hb_002990_020 Hb_002990_020 Hb_006827_010--Hb_002990_020 Hb_006616_070--Hb_000450_110 Hb_006616_070--Hb_001300_090 Hb_006616_070--Hb_000247_060 Hb_004291_060 Hb_004291_060 Hb_002474_020--Hb_004291_060 Hb_003559_010 Hb_003559_010 Hb_002474_020--Hb_003559_010 Hb_002474_020--Hb_000247_060 Hb_002474_020--Hb_000450_110 Hb_000450_110--Hb_000247_060 Hb_009004_020 Hb_009004_020 Hb_000450_110--Hb_009004_020 Hb_002395_040 Hb_002395_040 Hb_000450_110--Hb_002395_040 Hb_003796_010 Hb_003796_010 Hb_004643_020--Hb_003796_010 Hb_089305_040 Hb_089305_040 Hb_004643_020--Hb_089305_040 Hb_004951_030 Hb_004951_030 Hb_004643_020--Hb_004951_030 Hb_004643_020--Hb_001300_090 Hb_004643_020--Hb_002990_020 Hb_009393_110 Hb_009393_110 Hb_004643_020--Hb_009393_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0975216 0 0.0551306 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.539358

CAGE analysis