Hb_008225_020

Information

Type -
Description -
Location Contig8225: 4705-6949
Sequence    

Annotation

kegg
ID rcu:RCOM_1508240
description cytochrome P450, putative (EC:1.14.13.68)
nr
ID XP_012079955.1
description PREDICTED: cytochrome P450 71A26-like [Jatropha curcas]
swissprot
ID Q9STK7
description Cytochrome P450 71A26 OS=Arabidopsis thaliana GN=CYP71A26 PE=3 SV=1
trembl
ID B9RAS2
description Cytochrome P450, putative OS=Ricinus communis GN=RCOM_1508240 PE=3 SV=1
Gene Ontology
ID GO:0005506
description cytochrome p450 71a26-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59626: 4749-5074 , PASA_asmbl_59627: 5166-6164
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008225_020 0.0 - - PREDICTED: cytochrome P450 71A26-like [Jatropha curcas]
2 Hb_009393_110 0.0996681029 - - PREDICTED: circadian locomoter output cycles protein kaput [Jatropha curcas]
3 Hb_004951_030 0.1290453442 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
4 Hb_119832_010 0.1292117292 - - -
5 Hb_000311_110 0.1404384062 - - ATP-binding cassette transporter, putative [Ricinus communis]
6 Hb_062503_010 0.144484623 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_005183_060 0.14822295 - - hypothetical protein JCGZ_04271 [Jatropha curcas]
8 Hb_000103_380 0.1532125024 - - PREDICTED: uncharacterized protein LOC104596624 [Nelumbo nucifera]
9 Hb_000668_180 0.1557506648 - - hypothetical protein POPTR_0005s16490g [Populus trichocarpa]
10 Hb_003299_060 0.1570238992 - - nitrate transporter, putative [Ricinus communis]
11 Hb_002876_010 0.1587292708 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
12 Hb_000832_360 0.1593451886 - - -
13 Hb_000780_160 0.1604675637 - - hypothetical protein RCOM_0483300 [Ricinus communis]
14 Hb_101778_010 0.1621527598 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_001999_050 0.1626780868 rubber biosynthesis Gene Name: CPT7 PREDICTED: dehydrodolichyl diphosphate synthase 2 [Jatropha curcas]
16 Hb_003796_010 0.1636970336 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
17 Hb_000224_250 0.1645582136 - - hypothetical protein AMTR_s05400p00003230 [Amborella trichopoda]
18 Hb_005337_140 0.167171195 - - PREDICTED: LOW QUALITY PROTEIN: wall-associated receptor kinase 1-like [Jatropha curcas]
19 Hb_001105_140 0.167983061 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
20 Hb_000951_070 0.1701675785 - - PREDICTED: LOW QUALITY PROTEIN: receptor-like protein kinase FERONIA [Populus euphratica]

Gene co-expression network

sample Hb_008225_020 Hb_008225_020 Hb_009393_110 Hb_009393_110 Hb_008225_020--Hb_009393_110 Hb_004951_030 Hb_004951_030 Hb_008225_020--Hb_004951_030 Hb_119832_010 Hb_119832_010 Hb_008225_020--Hb_119832_010 Hb_000311_110 Hb_000311_110 Hb_008225_020--Hb_000311_110 Hb_062503_010 Hb_062503_010 Hb_008225_020--Hb_062503_010 Hb_005183_060 Hb_005183_060 Hb_008225_020--Hb_005183_060 Hb_003796_010 Hb_003796_010 Hb_009393_110--Hb_003796_010 Hb_009393_110--Hb_004951_030 Hb_009393_110--Hb_119832_010 Hb_009393_110--Hb_000311_110 Hb_000951_070 Hb_000951_070 Hb_009393_110--Hb_000951_070 Hb_004951_030--Hb_003796_010 Hb_004951_030--Hb_119832_010 Hb_004643_020 Hb_004643_020 Hb_004951_030--Hb_004643_020 Hb_018105_010 Hb_018105_010 Hb_004951_030--Hb_018105_010 Hb_119832_010--Hb_000311_110 Hb_029510_060 Hb_029510_060 Hb_119832_010--Hb_029510_060 Hb_003440_080 Hb_003440_080 Hb_119832_010--Hb_003440_080 Hb_119832_010--Hb_003796_010 Hb_001999_050 Hb_001999_050 Hb_000311_110--Hb_001999_050 Hb_000311_110--Hb_018105_010 Hb_000311_110--Hb_003440_080 Hb_000780_160 Hb_000780_160 Hb_000311_110--Hb_000780_160 Hb_062503_010--Hb_005183_060 Hb_101778_010 Hb_101778_010 Hb_062503_010--Hb_101778_010 Hb_007507_030 Hb_007507_030 Hb_062503_010--Hb_007507_030 Hb_002876_010 Hb_002876_010 Hb_062503_010--Hb_002876_010 Hb_000103_380 Hb_000103_380 Hb_062503_010--Hb_000103_380 Hb_000224_250 Hb_000224_250 Hb_062503_010--Hb_000224_250 Hb_005183_060--Hb_101778_010 Hb_005183_060--Hb_000103_380 Hb_000832_360 Hb_000832_360 Hb_005183_060--Hb_000832_360 Hb_005183_060--Hb_007507_030 Hb_005183_060--Hb_002876_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0117196 42.5246 22.9641 5.67079 0.0109734 0.01149
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.106661 0.0629389 0 0.49322 89.7944

CAGE analysis