Hb_003440_080

Information

Type -
Description -
Location Contig3440: 51404-54084
Sequence    

Annotation

kegg
ID cam:101511883
description genome polyprotein-like
nr
ID YP_008992013.1
description polyprotein [Citrus endogenous pararetrovirus]
swissprot
ID Q91DM0
description Genome polyprotein OS=Petunia vein clearing virus (isolate Shepherd) PE=3 SV=1
trembl
ID V9QF33
description Polyprotein OS=Citrus endogenous pararetrovirus PE=4 SV=1
Gene Ontology
ID GO:0005488
description movement protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003440_080 0.0 - - polyprotein [Citrus endogenous pararetrovirus]
2 Hb_000574_340 0.0660869814 - - hypothetical protein RCOM_0901420 [Ricinus communis]
3 Hb_012796_030 0.0679403159 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
4 Hb_000289_090 0.1080904621 - - -
5 Hb_000951_070 0.1083139098 - - PREDICTED: LOW QUALITY PROTEIN: receptor-like protein kinase FERONIA [Populus euphratica]
6 Hb_119832_010 0.1148952401 - - -
7 Hb_027337_130 0.1187140666 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Jatropha curcas]
8 Hb_000311_110 0.1230148245 - - ATP-binding cassette transporter, putative [Ricinus communis]
9 Hb_010402_040 0.124482981 - - hypothetical protein JCGZ_21227 [Jatropha curcas]
10 Hb_005092_090 0.1251211571 - - cold regulated protein [Manihot esculenta]
11 Hb_066293_010 0.126171422 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
12 Hb_029510_060 0.129944517 - - PREDICTED: probable plastidic glucose transporter 3 [Jatropha curcas]
13 Hb_004979_080 0.1309033368 - - kinase, putative [Ricinus communis]
14 Hb_003643_080 0.1321890081 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
15 Hb_188075_010 0.1324429158 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
16 Hb_004994_200 0.1347448531 - - PREDICTED: uncharacterized protein LOC105174340 [Sesamum indicum]
17 Hb_006787_070 0.1400818236 - - PREDICTED: uncharacterized protein LOC104121706, partial [Nicotiana tomentosiformis]
18 Hb_004117_320 0.1402996735 - - PREDICTED: probable serine/threonine-protein kinase WNK5 [Jatropha curcas]
19 Hb_003226_230 0.143613234 - - PREDICTED: transposon Ty3-G Gag-Pol polyprotein [Phoenix dactylifera]
20 Hb_162676_010 0.1437635861 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003440_080 Hb_003440_080 Hb_000574_340 Hb_000574_340 Hb_003440_080--Hb_000574_340 Hb_012796_030 Hb_012796_030 Hb_003440_080--Hb_012796_030 Hb_000289_090 Hb_000289_090 Hb_003440_080--Hb_000289_090 Hb_000951_070 Hb_000951_070 Hb_003440_080--Hb_000951_070 Hb_119832_010 Hb_119832_010 Hb_003440_080--Hb_119832_010 Hb_027337_130 Hb_027337_130 Hb_003440_080--Hb_027337_130 Hb_003643_080 Hb_003643_080 Hb_000574_340--Hb_003643_080 Hb_000574_340--Hb_012796_030 Hb_000574_340--Hb_027337_130 Hb_005092_090 Hb_005092_090 Hb_000574_340--Hb_005092_090 Hb_188075_010 Hb_188075_010 Hb_000574_340--Hb_188075_010 Hb_012796_030--Hb_000289_090 Hb_012796_030--Hb_005092_090 Hb_006787_070 Hb_006787_070 Hb_012796_030--Hb_006787_070 Hb_004994_200 Hb_004994_200 Hb_012796_030--Hb_004994_200 Hb_000289_090--Hb_004994_200 Hb_010863_070 Hb_010863_070 Hb_000289_090--Hb_010863_070 Hb_000289_090--Hb_119832_010 Hb_004372_050 Hb_004372_050 Hb_000289_090--Hb_004372_050 Hb_010402_040 Hb_010402_040 Hb_000951_070--Hb_010402_040 Hb_000668_180 Hb_000668_180 Hb_000951_070--Hb_000668_180 Hb_089305_040 Hb_089305_040 Hb_000951_070--Hb_089305_040 Hb_003796_010 Hb_003796_010 Hb_000951_070--Hb_003796_010 Hb_004117_320 Hb_004117_320 Hb_000951_070--Hb_004117_320 Hb_000311_110 Hb_000311_110 Hb_119832_010--Hb_000311_110 Hb_009393_110 Hb_009393_110 Hb_119832_010--Hb_009393_110 Hb_029510_060 Hb_029510_060 Hb_119832_010--Hb_029510_060 Hb_004951_030 Hb_004951_030 Hb_119832_010--Hb_004951_030 Hb_119832_010--Hb_003796_010 Hb_027337_130--Hb_188075_010 Hb_002636_070 Hb_002636_070 Hb_027337_130--Hb_002636_070 Hb_004291_050 Hb_004291_050 Hb_027337_130--Hb_004291_050 Hb_008461_070 Hb_008461_070 Hb_027337_130--Hb_008461_070 Hb_000033_010 Hb_000033_010 Hb_027337_130--Hb_000033_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.162557 0.0735423 0.0925032 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0380469 0.483756

CAGE analysis