Hb_004994_200

Information

Type -
Description -
Location Contig4994: 131696-140686
Sequence    

Annotation

kegg
ID tcc:TCM_005384
description NAD(P)-binding Rossmann-fold superfamily protein
nr
ID XP_011094713.1
description PREDICTED: uncharacterized protein LOC105174340 [Sesamum indicum]
swissprot
ID Q9M2E2
description (+)-neomenthol dehydrogenase OS=Arabidopsis thaliana GN=SDR1 PE=1 SV=1
trembl
ID A0A061DTA4
description NAD(P)-binding Rossmann-fold superfamily protein OS=Theobroma cacao GN=TCM_005384 PE=3 SV=1
Gene Ontology
ID GO:0016491
description (+)-neomenthol dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45638: 133818-134119 , PASA_asmbl_45639: 135401-137331
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004994_200 0.0 - - PREDICTED: uncharacterized protein LOC105174340 [Sesamum indicum]
2 Hb_000289_090 0.1120854395 - - -
3 Hb_000331_220 0.1151681711 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002818_070 0.1165496584 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
5 Hb_000574_340 0.1211886524 - - hypothetical protein RCOM_0901420 [Ricinus communis]
6 Hb_012796_030 0.1258162532 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
7 Hb_001836_010 0.132728679 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 [Jatropha curcas]
8 Hb_003440_080 0.1347448531 - - polyprotein [Citrus endogenous pararetrovirus]
9 Hb_005092_090 0.1353106314 - - cold regulated protein [Manihot esculenta]
10 Hb_000027_230 0.135349129 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
11 Hb_000112_040 0.1376507164 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
12 Hb_172426_010 0.1377326908 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]
13 Hb_000311_110 0.1378850436 - - ATP-binding cassette transporter, putative [Ricinus communis]
14 Hb_000417_150 0.1381897155 - - hypothetical protein JCGZ_21586 [Jatropha curcas]
15 Hb_000363_050 0.1391018948 - - PREDICTED: zinc finger CCCH domain-containing protein 18-like isoform X2 [Jatropha curcas]
16 Hb_000009_390 0.1404534972 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 2 isoform X2 [Jatropha curcas]
17 Hb_003517_090 0.1459056933 - - PREDICTED: zinc finger CCCH domain-containing protein 18-like isoform X2 [Jatropha curcas]
18 Hb_001514_150 0.1467709735 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
19 Hb_004007_230 0.1487411882 - - PREDICTED: putative formamidase C869.04 isoform X1 [Jatropha curcas]
20 Hb_071130_020 0.1487545292 - - -

Gene co-expression network

sample Hb_004994_200 Hb_004994_200 Hb_000289_090 Hb_000289_090 Hb_004994_200--Hb_000289_090 Hb_000331_220 Hb_000331_220 Hb_004994_200--Hb_000331_220 Hb_002818_070 Hb_002818_070 Hb_004994_200--Hb_002818_070 Hb_000574_340 Hb_000574_340 Hb_004994_200--Hb_000574_340 Hb_012796_030 Hb_012796_030 Hb_004994_200--Hb_012796_030 Hb_001836_010 Hb_001836_010 Hb_004994_200--Hb_001836_010 Hb_000289_090--Hb_012796_030 Hb_003440_080 Hb_003440_080 Hb_000289_090--Hb_003440_080 Hb_010863_070 Hb_010863_070 Hb_000289_090--Hb_010863_070 Hb_119832_010 Hb_119832_010 Hb_000289_090--Hb_119832_010 Hb_004372_050 Hb_004372_050 Hb_000289_090--Hb_004372_050 Hb_000112_040 Hb_000112_040 Hb_000331_220--Hb_000112_040 Hb_071130_020 Hb_071130_020 Hb_000331_220--Hb_071130_020 Hb_000331_220--Hb_002818_070 Hb_000331_220--Hb_001836_010 Hb_064293_010 Hb_064293_010 Hb_000331_220--Hb_064293_010 Hb_002818_070--Hb_001836_010 Hb_000009_390 Hb_000009_390 Hb_002818_070--Hb_000009_390 Hb_003077_140 Hb_003077_140 Hb_002818_070--Hb_003077_140 Hb_002818_070--Hb_071130_020 Hb_000680_020 Hb_000680_020 Hb_002818_070--Hb_000680_020 Hb_000574_340--Hb_003440_080 Hb_003643_080 Hb_003643_080 Hb_000574_340--Hb_003643_080 Hb_000574_340--Hb_012796_030 Hb_027337_130 Hb_027337_130 Hb_000574_340--Hb_027337_130 Hb_005092_090 Hb_005092_090 Hb_000574_340--Hb_005092_090 Hb_188075_010 Hb_188075_010 Hb_000574_340--Hb_188075_010 Hb_012796_030--Hb_003440_080 Hb_012796_030--Hb_005092_090 Hb_006787_070 Hb_006787_070 Hb_012796_030--Hb_006787_070 Hb_001836_010--Hb_000009_390 Hb_007035_010 Hb_007035_010 Hb_001836_010--Hb_007035_010 Hb_003683_200 Hb_003683_200 Hb_001836_010--Hb_003683_200 Hb_006827_030 Hb_006827_030 Hb_001836_010--Hb_006827_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 8.78544 2.37558 2.69035 0.0130388 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.031604 0.049739 0 2.34877 13.6159

CAGE analysis