Hb_071130_020

Information

Type -
Description -
Location Contig71130: 32187-34212
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55310: 32261-32849
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_071130_020 0.0 - - -
2 Hb_000331_220 0.0860054004 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000680_020 0.0979666316 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
4 Hb_001856_110 0.0983203968 - - PREDICTED: cellulose synthase-like protein G2 [Populus euphratica]
5 Hb_002818_070 0.0985876109 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
6 Hb_000009_390 0.1122036272 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 2 isoform X2 [Jatropha curcas]
7 Hb_003683_200 0.1135524875 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
8 Hb_001836_010 0.1214217454 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 [Jatropha curcas]
9 Hb_000112_040 0.125309927 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
10 Hb_033153_040 0.1413655794 - - o-methyltransferase, putative [Ricinus communis]
11 Hb_001866_100 0.1441538374 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
12 Hb_171168_010 0.1479957125 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
13 Hb_004994_200 0.1487545292 - - PREDICTED: uncharacterized protein LOC105174340 [Sesamum indicum]
14 Hb_031949_010 0.1500108249 - - -
15 Hb_064293_010 0.1507510492 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
16 Hb_003077_140 0.1547483356 - - hypothetical protein JCGZ_16294 [Jatropha curcas]
17 Hb_002849_120 0.1571862105 - - ferric reductase oxidase [Manihot esculenta]
18 Hb_026053_030 0.1601558504 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
19 Hb_006588_020 0.1612550304 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
20 Hb_000417_250 0.1620611587 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 65 [Jatropha curcas]

Gene co-expression network

sample Hb_071130_020 Hb_071130_020 Hb_000331_220 Hb_000331_220 Hb_071130_020--Hb_000331_220 Hb_000680_020 Hb_000680_020 Hb_071130_020--Hb_000680_020 Hb_001856_110 Hb_001856_110 Hb_071130_020--Hb_001856_110 Hb_002818_070 Hb_002818_070 Hb_071130_020--Hb_002818_070 Hb_000009_390 Hb_000009_390 Hb_071130_020--Hb_000009_390 Hb_003683_200 Hb_003683_200 Hb_071130_020--Hb_003683_200 Hb_000112_040 Hb_000112_040 Hb_000331_220--Hb_000112_040 Hb_000331_220--Hb_002818_070 Hb_001836_010 Hb_001836_010 Hb_000331_220--Hb_001836_010 Hb_064293_010 Hb_064293_010 Hb_000331_220--Hb_064293_010 Hb_004994_200 Hb_004994_200 Hb_000331_220--Hb_004994_200 Hb_000680_020--Hb_003683_200 Hb_002849_120 Hb_002849_120 Hb_000680_020--Hb_002849_120 Hb_033153_040 Hb_033153_040 Hb_000680_020--Hb_033153_040 Hb_127661_010 Hb_127661_010 Hb_000680_020--Hb_127661_010 Hb_003077_140 Hb_003077_140 Hb_000680_020--Hb_003077_140 Hb_001856_110--Hb_000009_390 Hb_001856_110--Hb_003683_200 Hb_031949_010 Hb_031949_010 Hb_001856_110--Hb_031949_010 Hb_001856_110--Hb_000680_020 Hb_003494_180 Hb_003494_180 Hb_001856_110--Hb_003494_180 Hb_002818_070--Hb_001836_010 Hb_002818_070--Hb_000009_390 Hb_002818_070--Hb_003077_140 Hb_002818_070--Hb_000680_020 Hb_001866_100 Hb_001866_100 Hb_000009_390--Hb_001866_100 Hb_000009_390--Hb_001836_010 Hb_007035_010 Hb_007035_010 Hb_000009_390--Hb_007035_010 Hb_001514_150 Hb_001514_150 Hb_000009_390--Hb_001514_150 Hb_000116_330 Hb_000116_330 Hb_003683_200--Hb_000116_330 Hb_003683_200--Hb_001836_010 Hb_004525_020 Hb_004525_020 Hb_003683_200--Hb_004525_020 Hb_003683_200--Hb_002849_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.38863 0.678341 0.203302 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.551025 1.65696

CAGE analysis