Hb_005092_090

Information

Type -
Description -
Location Contig5092: 135577-141060
Sequence    

Annotation

kegg
ID pop:POPTR_0016s00840g
description POPTRDRAFT_824960; copper-binding family protein
nr
ID AGC51782.1
description cold regulated protein [Manihot esculenta]
swissprot
ID Q9SZN7
description Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1
trembl
ID V9M4U8
description Cold regulated protein OS=Manihot esculenta GN=COR78 PE=2 SV=1
Gene Ontology
ID GO:0046872
description fk506-binding protein 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46224: 135348-141156
cDNA
(Sanger)
(ID:Location)		 003_M03.ab1: 135762-141156 , 034_L03.ab1: 135762-141156

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005092_090 0.0 - - cold regulated protein [Manihot esculenta]
2 Hb_006588_020 0.0789873957 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
3 Hb_000574_340 0.0983095012 - - hypothetical protein RCOM_0901420 [Ricinus communis]
4 Hb_001345_040 0.1012646786 - - hypothetical protein VITISV_015004 [Vitis vinifera]
5 Hb_116784_020 0.1021215836 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
6 Hb_001366_260 0.1053640184 - - T4.15 [Malus x robusta]
7 Hb_012796_030 0.1096210484 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
8 Hb_001514_150 0.1123876763 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
9 Hb_006787_070 0.1168972087 - - PREDICTED: uncharacterized protein LOC104121706, partial [Nicotiana tomentosiformis]
10 Hb_000060_130 0.118674151 - - -
11 Hb_003913_040 0.1195910805 - - ferric reductase oxidase [Manihot esculenta]
12 Hb_000027_230 0.1227193425 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
13 Hb_003440_080 0.1251211571 - - polyprotein [Citrus endogenous pararetrovirus]
14 Hb_000820_100 0.1271366302 - - RNA-directed DNA polymerase [Arachis hypogaea]
15 Hb_004312_020 0.1282700725 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003643_080 0.1294055345 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
17 Hb_000009_390 0.1298393556 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 2 isoform X2 [Jatropha curcas]
18 Hb_067472_010 0.130383754 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
19 Hb_007543_020 0.1305837184 - - PREDICTED: uncharacterized protein LOC104229533, partial [Nicotiana sylvestris]
20 Hb_001836_010 0.1317148482 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 [Jatropha curcas]

Gene co-expression network

sample Hb_005092_090 Hb_005092_090 Hb_006588_020 Hb_006588_020 Hb_005092_090--Hb_006588_020 Hb_000574_340 Hb_000574_340 Hb_005092_090--Hb_000574_340 Hb_001345_040 Hb_001345_040 Hb_005092_090--Hb_001345_040 Hb_116784_020 Hb_116784_020 Hb_005092_090--Hb_116784_020 Hb_001366_260 Hb_001366_260 Hb_005092_090--Hb_001366_260 Hb_012796_030 Hb_012796_030 Hb_005092_090--Hb_012796_030 Hb_001866_100 Hb_001866_100 Hb_006588_020--Hb_001866_100 Hb_006588_020--Hb_001345_040 Hb_007035_010 Hb_007035_010 Hb_006588_020--Hb_007035_010 Hb_000049_170 Hb_000049_170 Hb_006588_020--Hb_000049_170 Hb_000009_390 Hb_000009_390 Hb_006588_020--Hb_000009_390 Hb_003440_080 Hb_003440_080 Hb_000574_340--Hb_003440_080 Hb_003643_080 Hb_003643_080 Hb_000574_340--Hb_003643_080 Hb_000574_340--Hb_012796_030 Hb_027337_130 Hb_027337_130 Hb_000574_340--Hb_027337_130 Hb_188075_010 Hb_188075_010 Hb_000574_340--Hb_188075_010 Hb_001345_040--Hb_188075_010 Hb_000352_060 Hb_000352_060 Hb_001345_040--Hb_000352_060 Hb_004312_020 Hb_004312_020 Hb_001345_040--Hb_004312_020 Hb_006787_070 Hb_006787_070 Hb_001345_040--Hb_006787_070 Hb_067472_010 Hb_067472_010 Hb_116784_020--Hb_067472_010 Hb_116784_020--Hb_001366_260 Hb_116784_020--Hb_000352_060 Hb_001468_040 Hb_001468_040 Hb_116784_020--Hb_001468_040 Hb_000027_230 Hb_000027_230 Hb_116784_020--Hb_000027_230 Hb_000820_100 Hb_000820_100 Hb_116784_020--Hb_000820_100 Hb_001366_260--Hb_000820_100 Hb_001366_260--Hb_067472_010 Hb_007543_020 Hb_007543_020 Hb_001366_260--Hb_007543_020 Hb_000173_110 Hb_000173_110 Hb_001366_260--Hb_000173_110 Hb_012796_030--Hb_003440_080 Hb_000289_090 Hb_000289_090 Hb_012796_030--Hb_000289_090 Hb_012796_030--Hb_006787_070 Hb_004994_200 Hb_004994_200 Hb_012796_030--Hb_004994_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.780579 124.153 76.3986 40.1261 0.683514 1.17859
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0716454 0.0563311 0.101464 62.3233 352.073

CAGE analysis