Hb_000820_100

Information

Type -
Description -
Location Contig820: 106127-109268
Sequence    

Annotation

kegg
ID bvg:104898613
description uncharacterized LOC104898613
nr
ID AEL30343.1
description RNA-directed DNA polymerase [Arachis hypogaea]
swissprot
ID P16423
description Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID I1I004
description Uncharacterized protein OS=Brachypodium distachyon GN=BRADI3G11987 PE=4 SV=1
Gene Ontology
ID GO:0097159
description retrovirus-related pol polyprotein line-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000820_100 0.0 - - RNA-directed DNA polymerase [Arachis hypogaea]
2 Hb_001366_260 0.0523478206 - - T4.15 [Malus x robusta]
3 Hb_007543_020 0.0627795157 - - PREDICTED: uncharacterized protein LOC104229533, partial [Nicotiana sylvestris]
4 Hb_004520_010 0.098549671 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
5 Hb_000173_110 0.0990336043 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
6 Hb_116784_020 0.1012855849 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
7 Hb_000123_340 0.1039889114 - - PREDICTED: uncharacterized protein LOC105789586 [Gossypium raimondii]
8 Hb_067472_010 0.1095112292 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
9 Hb_009434_060 0.1116939603 - - T4.15 [Malus x robusta]
10 Hb_142522_040 0.1209317688 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
11 Hb_001385_070 0.1236829064 - - hypothetical protein VITISV_019194 [Vitis vinifera]
12 Hb_004312_020 0.1267376479 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005092_090 0.1271366302 - - cold regulated protein [Manihot esculenta]
14 Hb_011472_050 0.1280732292 - - -
15 Hb_003913_040 0.128103893 - - ferric reductase oxidase [Manihot esculenta]
16 Hb_000352_060 0.1288242656 - - RNA-directed DNA polymerase [Arachis hypogaea]
17 Hb_001514_150 0.1302752795 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
18 Hb_010565_030 0.1310814711 - - hypothetical protein VITISV_006810 [Vitis vinifera]
19 Hb_002013_030 0.1345893584 - - PREDICTED: uncharacterized protein LOC104799692 [Tarenaya hassleriana]
20 Hb_001345_040 0.1350429176 - - hypothetical protein VITISV_015004 [Vitis vinifera]

Gene co-expression network

sample Hb_000820_100 Hb_000820_100 Hb_001366_260 Hb_001366_260 Hb_000820_100--Hb_001366_260 Hb_007543_020 Hb_007543_020 Hb_000820_100--Hb_007543_020 Hb_004520_010 Hb_004520_010 Hb_000820_100--Hb_004520_010 Hb_000173_110 Hb_000173_110 Hb_000820_100--Hb_000173_110 Hb_116784_020 Hb_116784_020 Hb_000820_100--Hb_116784_020 Hb_000123_340 Hb_000123_340 Hb_000820_100--Hb_000123_340 Hb_001366_260--Hb_116784_020 Hb_067472_010 Hb_067472_010 Hb_001366_260--Hb_067472_010 Hb_001366_260--Hb_007543_020 Hb_001366_260--Hb_000173_110 Hb_005092_090 Hb_005092_090 Hb_001366_260--Hb_005092_090 Hb_007543_020--Hb_116784_020 Hb_009434_060 Hb_009434_060 Hb_007543_020--Hb_009434_060 Hb_000060_130 Hb_000060_130 Hb_007543_020--Hb_000060_130 Hb_007543_020--Hb_000123_340 Hb_035651_010 Hb_035651_010 Hb_004520_010--Hb_035651_010 Hb_001385_070 Hb_001385_070 Hb_004520_010--Hb_001385_070 Hb_005920_030 Hb_005920_030 Hb_004520_010--Hb_005920_030 Hb_004520_010--Hb_000123_340 Hb_004520_010--Hb_007543_020 Hb_000173_110--Hb_000123_340 Hb_010565_030 Hb_010565_030 Hb_000173_110--Hb_010565_030 Hb_000173_110--Hb_116784_020 Hb_011472_050 Hb_011472_050 Hb_000173_110--Hb_011472_050 Hb_116784_020--Hb_067472_010 Hb_000352_060 Hb_000352_060 Hb_116784_020--Hb_000352_060 Hb_001468_040 Hb_001468_040 Hb_116784_020--Hb_001468_040 Hb_000027_230 Hb_000027_230 Hb_116784_020--Hb_000027_230 Hb_000123_340--Hb_001385_070 Hb_127552_050 Hb_127552_050 Hb_000123_340--Hb_127552_050 Hb_000123_340--Hb_010565_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.570814 18.577 10.262 4.92528 0.822556 1.41315
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.187693 0.147649 0.661319 16.6128 66.1112

CAGE analysis