Hb_000173_110

Information

Type -
Description -
Location Contig173: 88336-92362
Sequence    

Annotation

kegg
ID bdi:104583892
description uncharacterized LOC104583892
nr
ID CBL94163.1
description putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
swissprot
ID -
description -
trembl
ID I1HP84
description Uncharacterized protein OS=Brachypodium distachyon GN=BRADI2G42996 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000173_110 0.0 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
2 Hb_000123_340 0.0964639276 - - PREDICTED: uncharacterized protein LOC105789586 [Gossypium raimondii]
3 Hb_001366_260 0.0983446924 - - T4.15 [Malus x robusta]
4 Hb_000820_100 0.0990336043 - - RNA-directed DNA polymerase [Arachis hypogaea]
5 Hb_010565_030 0.1019773492 - - hypothetical protein VITISV_006810 [Vitis vinifera]
6 Hb_116784_020 0.105032192 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
7 Hb_011472_050 0.1139244448 - - -
8 Hb_000352_060 0.1180024989 - - RNA-directed DNA polymerase [Arachis hypogaea]
9 Hb_007543_020 0.1197246135 - - PREDICTED: uncharacterized protein LOC104229533, partial [Nicotiana sylvestris]
10 Hb_000527_120 0.1227570633 - - hypothetical protein VITISV_027174 [Vitis vinifera]
11 Hb_009434_060 0.1275597302 - - T4.15 [Malus x robusta]
12 Hb_004242_120 0.1310149302 - - Organic cation transporter, putative [Ricinus communis]
13 Hb_142522_040 0.1332219153 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_005542_010 0.1364770234 - - Uncharacterized protein TCM_021447 [Theobroma cacao]
15 Hb_002013_030 0.1375636141 - - PREDICTED: uncharacterized protein LOC104799692 [Tarenaya hassleriana]
16 Hb_003913_040 0.1384665279 - - ferric reductase oxidase [Manihot esculenta]
17 Hb_001468_040 0.1413020867 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
18 Hb_067472_010 0.1422623305 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
19 Hb_001385_070 0.1431999317 - - hypothetical protein VITISV_019194 [Vitis vinifera]
20 Hb_005092_090 0.1447970201 - - cold regulated protein [Manihot esculenta]

Gene co-expression network

sample Hb_000173_110 Hb_000173_110 Hb_000123_340 Hb_000123_340 Hb_000173_110--Hb_000123_340 Hb_001366_260 Hb_001366_260 Hb_000173_110--Hb_001366_260 Hb_000820_100 Hb_000820_100 Hb_000173_110--Hb_000820_100 Hb_010565_030 Hb_010565_030 Hb_000173_110--Hb_010565_030 Hb_116784_020 Hb_116784_020 Hb_000173_110--Hb_116784_020 Hb_011472_050 Hb_011472_050 Hb_000173_110--Hb_011472_050 Hb_001385_070 Hb_001385_070 Hb_000123_340--Hb_001385_070 Hb_000123_340--Hb_000820_100 Hb_127552_050 Hb_127552_050 Hb_000123_340--Hb_127552_050 Hb_007543_020 Hb_007543_020 Hb_000123_340--Hb_007543_020 Hb_000123_340--Hb_010565_030 Hb_001366_260--Hb_000820_100 Hb_001366_260--Hb_116784_020 Hb_067472_010 Hb_067472_010 Hb_001366_260--Hb_067472_010 Hb_001366_260--Hb_007543_020 Hb_005092_090 Hb_005092_090 Hb_001366_260--Hb_005092_090 Hb_000820_100--Hb_007543_020 Hb_004520_010 Hb_004520_010 Hb_000820_100--Hb_004520_010 Hb_000820_100--Hb_116784_020 Hb_005542_010 Hb_005542_010 Hb_010565_030--Hb_005542_010 Hb_010565_030--Hb_011472_050 Hb_011609_210 Hb_011609_210 Hb_010565_030--Hb_011609_210 Hb_002110_110 Hb_002110_110 Hb_010565_030--Hb_002110_110 Hb_116784_020--Hb_067472_010 Hb_000352_060 Hb_000352_060 Hb_116784_020--Hb_000352_060 Hb_001468_040 Hb_001468_040 Hb_116784_020--Hb_001468_040 Hb_000027_230 Hb_000027_230 Hb_116784_020--Hb_000027_230 Hb_011472_050--Hb_005542_010 Hb_011472_050--Hb_067472_010 Hb_011472_050--Hb_001366_260 Hb_009434_060 Hb_009434_060 Hb_011472_050--Hb_009434_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0722877 1.10659 0.765495 0.341435 0.107372 0.089547
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0412683 0.0649442 0 0.832651 3.783

CAGE analysis