Hb_002110_110

Information

Type -
Description -
Location Contig2110: 111204-124138
Sequence    

Annotation

kegg
ID bvg:104901272
description uncharacterized LOC104901272
nr
ID XP_009760314.1
description PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID Q7XBS7
description Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os10g42880 PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21858: 113203-113511
cDNA
(Sanger)
(ID:Location)		 046_G21r.ab1: 112533-120151

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002110_110 0.0 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
2 Hb_000032_020 0.111309878 - - Centromeric protein E, putative [Ricinus communis]
3 Hb_005542_010 0.112752989 - - Uncharacterized protein TCM_021447 [Theobroma cacao]
4 Hb_000879_030 0.122329076 - - PREDICTED: uncharacterized protein LOC103707552 [Phoenix dactylifera]
5 Hb_001405_230 0.1286385893 - - STELAR K+ outward rectifier isoform 2 [Theobroma cacao]
6 Hb_010565_030 0.12930406 - - hypothetical protein VITISV_006810 [Vitis vinifera]
7 Hb_011472_050 0.1319872247 - - -
8 Hb_002395_020 0.1375342943 - - Protein CREG1 precursor, putative [Ricinus communis]
9 Hb_027337_030 0.1412057219 - - PREDICTED: uncharacterized protein LOC104602841 [Nelumbo nucifera]
10 Hb_042463_060 0.1412070206 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003517_090 0.1516728704 - - PREDICTED: zinc finger CCCH domain-containing protein 18-like isoform X2 [Jatropha curcas]
12 Hb_083242_020 0.1598836568 - - hypothetical protein JCGZ_20097 [Jatropha curcas]
13 Hb_004976_080 0.1607121429 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
14 Hb_004605_020 0.1607637584 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [Jatropha curcas]
15 Hb_000175_270 0.1633658526 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
16 Hb_003007_030 0.164417318 - - -
17 Hb_004319_060 0.1657284484 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
18 Hb_000365_220 0.1661377643 - - protein phosphatase-1, putative [Ricinus communis]
19 Hb_003020_300 0.1688896119 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003106_250 0.1690878168 - - hypothetical protein POPTR_0008s13520g [Populus trichocarpa]

Gene co-expression network

sample Hb_002110_110 Hb_002110_110 Hb_000032_020 Hb_000032_020 Hb_002110_110--Hb_000032_020 Hb_005542_010 Hb_005542_010 Hb_002110_110--Hb_005542_010 Hb_000879_030 Hb_000879_030 Hb_002110_110--Hb_000879_030 Hb_001405_230 Hb_001405_230 Hb_002110_110--Hb_001405_230 Hb_010565_030 Hb_010565_030 Hb_002110_110--Hb_010565_030 Hb_011472_050 Hb_011472_050 Hb_002110_110--Hb_011472_050 Hb_000032_020--Hb_000879_030 Hb_000221_180 Hb_000221_180 Hb_000032_020--Hb_000221_180 Hb_073973_020 Hb_073973_020 Hb_000032_020--Hb_073973_020 Hb_000175_270 Hb_000175_270 Hb_000032_020--Hb_000175_270 Hb_000032_020--Hb_005542_010 Hb_005542_010--Hb_010565_030 Hb_005542_010--Hb_011472_050 Hb_011609_210 Hb_011609_210 Hb_005542_010--Hb_011609_210 Hb_000173_110 Hb_000173_110 Hb_005542_010--Hb_000173_110 Hb_009434_060 Hb_009434_060 Hb_005542_010--Hb_009434_060 Hb_000879_030--Hb_005542_010 Hb_004319_060 Hb_004319_060 Hb_000879_030--Hb_004319_060 Hb_000406_190 Hb_000406_190 Hb_000879_030--Hb_000406_190 Hb_000879_030--Hb_000221_180 Hb_001405_230--Hb_011472_050 Hb_001405_230--Hb_009434_060 Hb_001405_230--Hb_005542_010 Hb_004976_080 Hb_004976_080 Hb_001405_230--Hb_004976_080 Hb_000574_320 Hb_000574_320 Hb_001405_230--Hb_000574_320 Hb_010565_030--Hb_011472_050 Hb_010565_030--Hb_000173_110 Hb_010565_030--Hb_011609_210 Hb_000123_340 Hb_000123_340 Hb_010565_030--Hb_000123_340 Hb_067472_010 Hb_067472_010 Hb_011472_050--Hb_067472_010 Hb_001366_260 Hb_001366_260 Hb_011472_050--Hb_001366_260 Hb_011472_050--Hb_000173_110 Hb_011472_050--Hb_009434_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.027639 0.948809 0.337738 0.181373 0.0661239 0.0671604
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0387528 0.0304933 0.0290122 0.393798 1.16435

CAGE analysis