Hb_001405_230

Information

Type -
Description -
Location Contig1405: 278522-293947
Sequence    

Annotation

kegg
ID gmx:100797927
description potassium channel SKOR-like
nr
ID XP_007023146.1
description STELAR K+ outward rectifier isoform 2 [Theobroma cacao]
swissprot
ID Q9M8S6
description Potassium channel SKOR OS=Arabidopsis thaliana GN=SKOR PE=1 SV=1
trembl
ID A0A061G8M6
description STELAR K+ outward rectifier isoform 2 OS=Theobroma cacao GN=TCM_027138 PE=4 SV=1
Gene Ontology
ID GO:0006811
description potassium channel skor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10983: 278344-278764 , PASA_asmbl_10984: 283364-285399
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001405_230 0.0 - - STELAR K+ outward rectifier isoform 2 [Theobroma cacao]
2 Hb_011472_050 0.1260646799 - - -
3 Hb_002110_110 0.1286385893 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
4 Hb_009434_060 0.1341135925 - - T4.15 [Malus x robusta]
5 Hb_005542_010 0.1427255571 - - Uncharacterized protein TCM_021447 [Theobroma cacao]
6 Hb_004976_080 0.1432845206 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
7 Hb_000574_320 0.1460352026 - - hypothetical protein CICLE_v10024937mg [Citrus clementina]
8 Hb_010565_030 0.1471011035 - - hypothetical protein VITISV_006810 [Vitis vinifera]
9 Hb_003106_250 0.1634316322 - - hypothetical protein POPTR_0008s13520g [Populus trichocarpa]
10 Hb_000173_110 0.1638736073 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
11 Hb_004242_120 0.1677277543 - - Organic cation transporter, putative [Ricinus communis]
12 Hb_003007_030 0.1688114286 - - -
13 Hb_116784_020 0.1701404438 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
14 Hb_001476_090 0.1719741342 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 3 [Jatropha curcas]
15 Hb_000926_070 0.1726500479 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001836_010 0.1742578533 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 [Jatropha curcas]
17 Hb_006277_080 0.1754338412 - - PREDICTED: uncharacterized protein LOC105649701 [Jatropha curcas]
18 Hb_042463_060 0.1757339403 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000072_240 0.1767674723 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
20 Hb_000027_230 0.1782949935 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]

Gene co-expression network

sample Hb_001405_230 Hb_001405_230 Hb_011472_050 Hb_011472_050 Hb_001405_230--Hb_011472_050 Hb_002110_110 Hb_002110_110 Hb_001405_230--Hb_002110_110 Hb_009434_060 Hb_009434_060 Hb_001405_230--Hb_009434_060 Hb_005542_010 Hb_005542_010 Hb_001405_230--Hb_005542_010 Hb_004976_080 Hb_004976_080 Hb_001405_230--Hb_004976_080 Hb_000574_320 Hb_000574_320 Hb_001405_230--Hb_000574_320 Hb_010565_030 Hb_010565_030 Hb_011472_050--Hb_010565_030 Hb_011472_050--Hb_005542_010 Hb_067472_010 Hb_067472_010 Hb_011472_050--Hb_067472_010 Hb_001366_260 Hb_001366_260 Hb_011472_050--Hb_001366_260 Hb_000173_110 Hb_000173_110 Hb_011472_050--Hb_000173_110 Hb_011472_050--Hb_009434_060 Hb_000032_020 Hb_000032_020 Hb_002110_110--Hb_000032_020 Hb_002110_110--Hb_005542_010 Hb_000879_030 Hb_000879_030 Hb_002110_110--Hb_000879_030 Hb_002110_110--Hb_010565_030 Hb_002110_110--Hb_011472_050 Hb_009434_060--Hb_001366_260 Hb_000820_100 Hb_000820_100 Hb_009434_060--Hb_000820_100 Hb_007543_020 Hb_007543_020 Hb_009434_060--Hb_007543_020 Hb_116784_020 Hb_116784_020 Hb_009434_060--Hb_116784_020 Hb_009434_060--Hb_000173_110 Hb_005542_010--Hb_010565_030 Hb_011609_210 Hb_011609_210 Hb_005542_010--Hb_011609_210 Hb_005542_010--Hb_000173_110 Hb_005542_010--Hb_009434_060 Hb_019837_010 Hb_019837_010 Hb_004976_080--Hb_019837_010 Hb_000594_150 Hb_000594_150 Hb_004976_080--Hb_000594_150 Hb_000072_240 Hb_000072_240 Hb_004976_080--Hb_000072_240 Hb_004907_070 Hb_004907_070 Hb_004976_080--Hb_004907_070 Hb_000035_060 Hb_000035_060 Hb_004976_080--Hb_000035_060 Hb_004525_020 Hb_004525_020 Hb_004976_080--Hb_004525_020 Hb_140389_010 Hb_140389_010 Hb_000574_320--Hb_140389_010 Hb_000069_500 Hb_000069_500 Hb_000574_320--Hb_000069_500 Hb_000574_320--Hb_011472_050 Hb_006277_080 Hb_006277_080 Hb_000574_320--Hb_006277_080 Hb_000556_070 Hb_000556_070 Hb_000574_320--Hb_000556_070 Hb_002030_050 Hb_002030_050 Hb_000574_320--Hb_002030_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.048543 2.66514 1.85394 0.631031 0.403742 0.0915168
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0353215 0.0694851 0.0794794 0.960225 4.54916

CAGE analysis