Hb_140389_010

Information

Type -
Description -
Location Contig140389: 3448-4856
Sequence    

Annotation

kegg
ID rcu:RCOM_0400490
description Ran GTPase binding protein, putative
nr
ID XP_002533468.1
description Ran GTPase binding protein, putative [Ricinus communis]
swissprot
ID O82281
description Protein Brevis radix-like 1 OS=Arabidopsis thaliana GN=BRXL1 PE=2 SV=2
trembl
ID B9T5E9
description Ran GTPase binding protein, putative OS=Ricinus communis GN=RCOM_0400490 PE=4 SV=1
Gene Ontology
ID GO:0043167
description ran gtpase binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10931: 3484-3811
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_140389_010 0.0 - - Ran GTPase binding protein, putative [Ricinus communis]
2 Hb_006277_080 0.1048418494 - - PREDICTED: uncharacterized protein LOC105649701 [Jatropha curcas]
3 Hb_000574_320 0.1134899566 - - hypothetical protein CICLE_v10024937mg [Citrus clementina]
4 Hb_012539_040 0.1160844977 transcription factor TF Family: CPP hypothetical protein JCGZ_07765 [Jatropha curcas]
5 Hb_005015_020 0.1240864578 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
6 Hb_004324_120 0.1243135538 - - ATP-dependent zinc metalloprotease YME1L1 [Gossypium arboreum]
7 Hb_005288_180 0.1303121951 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_000005_100 0.1324734324 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
9 Hb_004346_040 0.1349636381 - - hypothetical protein POPTR_0016s06630g [Populus trichocarpa]
10 Hb_000069_500 0.1397190764 - - PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic [Jatropha curcas]
11 Hb_001250_020 0.1505113215 - - PREDICTED: CRS2-associated factor 2, chloroplastic [Jatropha curcas]
12 Hb_007982_040 0.1522402264 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
13 Hb_004109_130 0.1545318887 - - PREDICTED: translation initiation factor IF-2, chloroplastic [Jatropha curcas]
14 Hb_000093_140 0.1553283399 - - PREDICTED: fructokinase-like 2, chloroplastic [Jatropha curcas]
15 Hb_004223_270 0.1564249568 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
16 Hb_000926_070 0.158303062 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000933_110 0.1587663581 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 3 [Jatropha curcas]
18 Hb_022425_050 0.1592436144 - - PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]
19 Hb_000853_050 0.1599558435 - - PREDICTED: putative GTP diphosphokinase RSH1, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_003786_010 0.1611057832 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_140389_010 Hb_140389_010 Hb_006277_080 Hb_006277_080 Hb_140389_010--Hb_006277_080 Hb_000574_320 Hb_000574_320 Hb_140389_010--Hb_000574_320 Hb_012539_040 Hb_012539_040 Hb_140389_010--Hb_012539_040 Hb_005015_020 Hb_005015_020 Hb_140389_010--Hb_005015_020 Hb_004324_120 Hb_004324_120 Hb_140389_010--Hb_004324_120 Hb_005288_180 Hb_005288_180 Hb_140389_010--Hb_005288_180 Hb_000853_050 Hb_000853_050 Hb_006277_080--Hb_000853_050 Hb_000926_070 Hb_000926_070 Hb_006277_080--Hb_000926_070 Hb_002276_030 Hb_002276_030 Hb_006277_080--Hb_002276_030 Hb_003602_030 Hb_003602_030 Hb_006277_080--Hb_003602_030 Hb_003141_060 Hb_003141_060 Hb_006277_080--Hb_003141_060 Hb_000069_500 Hb_000069_500 Hb_000574_320--Hb_000069_500 Hb_011472_050 Hb_011472_050 Hb_000574_320--Hb_011472_050 Hb_000574_320--Hb_006277_080 Hb_000556_070 Hb_000556_070 Hb_000574_320--Hb_000556_070 Hb_002030_050 Hb_002030_050 Hb_000574_320--Hb_002030_050 Hb_012539_040--Hb_004324_120 Hb_012539_040--Hb_005015_020 Hb_004346_040 Hb_004346_040 Hb_012539_040--Hb_004346_040 Hb_000093_140 Hb_000093_140 Hb_012539_040--Hb_000093_140 Hb_000933_110 Hb_000933_110 Hb_012539_040--Hb_000933_110 Hb_005015_020--Hb_004324_120 Hb_005015_020--Hb_004346_040 Hb_005015_020--Hb_005288_180 Hb_000446_040 Hb_000446_040 Hb_005015_020--Hb_000446_040 Hb_002799_130 Hb_002799_130 Hb_005015_020--Hb_002799_130 Hb_004324_120--Hb_004346_040 Hb_004324_120--Hb_005288_180 Hb_137600_010 Hb_137600_010 Hb_004324_120--Hb_137600_010 Hb_004324_120--Hb_000446_040 Hb_005288_180--Hb_004346_040 Hb_001250_020 Hb_001250_020 Hb_005288_180--Hb_001250_020 Hb_003929_220 Hb_003929_220 Hb_005288_180--Hb_003929_220 Hb_002928_030 Hb_002928_030 Hb_005288_180--Hb_002928_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.754972 5.04224 6.28 2.34145 0.429839 1.19123
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.502411 0.592423 0.234238 1.26016 12.1996

CAGE analysis