Hb_000926_070

Information

Type -
Description -
Location Contig926: 89059-89606
Sequence    

Annotation

kegg
ID rcu:RCOM_1303160
description hypothetical protein
nr
ID XP_002529916.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SV97
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1303160 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62656: 89255-89554
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000926_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006277_080 0.1209033631 - - PREDICTED: uncharacterized protein LOC105649701 [Jatropha curcas]
3 Hb_006478_050 0.1277121123 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
4 Hb_000917_200 0.1337726293 - - hypothetical protein PRUPE_ppa010555mg [Prunus persica]
5 Hb_000103_230 0.1348840233 - - PREDICTED: chlorophyllase-2, chloroplastic [Jatropha curcas]
6 Hb_037711_010 0.1385182493 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
7 Hb_019863_050 0.1405123815 - - PREDICTED: uncharacterized protein LOC103343426 [Prunus mume]
8 Hb_000072_240 0.1411093194 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
9 Hb_003125_080 0.1426041272 - - PREDICTED: F-box protein At5g50450 [Jatropha curcas]
10 Hb_000853_050 0.1467354489 - - PREDICTED: putative GTP diphosphokinase RSH1, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_008878_020 0.1505670518 - - PREDICTED: aldehyde dehydrogenase family 3 member H1-like [Populus euphratica]
12 Hb_000574_320 0.1520618036 - - hypothetical protein CICLE_v10024937mg [Citrus clementina]
13 Hb_022693_080 0.1532818466 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
14 Hb_000002_300 0.1536258943 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
15 Hb_000968_010 0.1552406723 - - PREDICTED: glutamate receptor 3.7 isoform X1 [Jatropha curcas]
16 Hb_140389_010 0.158303062 - - Ran GTPase binding protein, putative [Ricinus communis]
17 Hb_002155_020 0.1588597011 - - PREDICTED: probable WRKY transcription factor 65 [Jatropha curcas]
18 Hb_011028_030 0.1607550196 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000787_210 0.1614411984 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000237_170 0.161517493 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 6 [Jatropha curcas]

Gene co-expression network

sample Hb_000926_070 Hb_000926_070 Hb_006277_080 Hb_006277_080 Hb_000926_070--Hb_006277_080 Hb_006478_050 Hb_006478_050 Hb_000926_070--Hb_006478_050 Hb_000917_200 Hb_000917_200 Hb_000926_070--Hb_000917_200 Hb_000103_230 Hb_000103_230 Hb_000926_070--Hb_000103_230 Hb_037711_010 Hb_037711_010 Hb_000926_070--Hb_037711_010 Hb_019863_050 Hb_019863_050 Hb_000926_070--Hb_019863_050 Hb_000853_050 Hb_000853_050 Hb_006277_080--Hb_000853_050 Hb_140389_010 Hb_140389_010 Hb_006277_080--Hb_140389_010 Hb_002276_030 Hb_002276_030 Hb_006277_080--Hb_002276_030 Hb_003602_030 Hb_003602_030 Hb_006277_080--Hb_003602_030 Hb_003141_060 Hb_003141_060 Hb_006277_080--Hb_003141_060 Hb_001629_120 Hb_001629_120 Hb_006478_050--Hb_001629_120 Hb_000922_160 Hb_000922_160 Hb_006478_050--Hb_000922_160 Hb_000037_200 Hb_000037_200 Hb_006478_050--Hb_000037_200 Hb_002890_160 Hb_002890_160 Hb_006478_050--Hb_002890_160 Hb_000260_410 Hb_000260_410 Hb_006478_050--Hb_000260_410 Hb_001352_030 Hb_001352_030 Hb_006478_050--Hb_001352_030 Hb_000917_200--Hb_006478_050 Hb_000062_050 Hb_000062_050 Hb_000917_200--Hb_000062_050 Hb_093077_010 Hb_093077_010 Hb_000917_200--Hb_093077_010 Hb_016687_010 Hb_016687_010 Hb_000917_200--Hb_016687_010 Hb_000891_010 Hb_000891_010 Hb_000917_200--Hb_000891_010 Hb_008878_020 Hb_008878_020 Hb_000917_200--Hb_008878_020 Hb_000787_210 Hb_000787_210 Hb_000103_230--Hb_000787_210 Hb_001252_030 Hb_001252_030 Hb_000103_230--Hb_001252_030 Hb_020141_030 Hb_020141_030 Hb_000103_230--Hb_020141_030 Hb_000130_140 Hb_000130_140 Hb_000103_230--Hb_000130_140 Hb_000237_170 Hb_000237_170 Hb_000103_230--Hb_000237_170 Hb_000208_270 Hb_000208_270 Hb_000103_230--Hb_000208_270 Hb_007253_030 Hb_007253_030 Hb_037711_010--Hb_007253_030 Hb_037711_010--Hb_006277_080 Hb_001508_030 Hb_001508_030 Hb_037711_010--Hb_001508_030 Hb_037711_010--Hb_019863_050 Hb_000072_240 Hb_000072_240 Hb_037711_010--Hb_000072_240 Hb_011028_030 Hb_011028_030 Hb_019863_050--Hb_011028_030 Hb_033363_030 Hb_033363_030 Hb_019863_050--Hb_033363_030 Hb_002211_020 Hb_002211_020 Hb_019863_050--Hb_002211_020 Hb_019863_050--Hb_000072_240 Hb_046739_010 Hb_046739_010 Hb_019863_050--Hb_046739_010 Hb_000031_320 Hb_000031_320 Hb_019863_050--Hb_000031_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0642804 2.31954 3.28436 1.43464 0.18153 0.250385
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.118659 0 0.645974 5.01727

CAGE analysis