Hb_001508_030

Information

Type -
Description -
Location Contig1508: 82666-86307
Sequence    

Annotation

kegg
ID tcc:TCM_020052
description Cysteine-rich RLK (RECEPTOR-like protein kinase) 8
nr
ID CAN62329.1
description hypothetical protein VITISV_029808 [Vitis vinifera]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A5AD90
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029808 PE=4 SV=1
Gene Ontology
ID GO:0005488
description hypothetical protein VITISV_040150

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12717: 86494-86872 , PASA_asmbl_12718: 85825-86166 , PASA_asmbl_12719: 84601-84730
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001508_030 0.0 - - hypothetical protein VITISV_029808 [Vitis vinifera]
2 Hb_008878_020 0.1137225509 - - PREDICTED: aldehyde dehydrogenase family 3 member H1-like [Populus euphratica]
3 Hb_000049_170 0.1259940495 - - conserved hypothetical protein [Ricinus communis]
4 Hb_171168_010 0.129453879 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
5 Hb_016687_010 0.1302156484 - - PREDICTED: uncharacterized protein LOC105637401 [Jatropha curcas]
6 Hb_000968_010 0.1309390227 - - PREDICTED: glutamate receptor 3.7 isoform X1 [Jatropha curcas]
7 Hb_000042_310 0.1322089959 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
8 Hb_001172_150 0.132360805 desease resistance Gene Name: ABC_membrane PREDICTED: putative ABC transporter C family member 15 [Jatropha curcas]
9 Hb_000697_020 0.1323916315 - - Zinc-binding dehydrogenase family protein isoform 1 [Theobroma cacao]
10 Hb_001579_060 0.1334974222 - - carbonic anhydrase, putative [Ricinus communis]
11 Hb_002155_020 0.1335920744 - - PREDICTED: probable WRKY transcription factor 65 [Jatropha curcas]
12 Hb_006827_030 0.1367809977 - - oligopeptide transporter, putative [Ricinus communis]
13 Hb_004374_100 0.1384641931 - - PREDICTED: phosphoglycerate mutase-like protein AT74H [Jatropha curcas]
14 Hb_002030_090 0.1393528352 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
15 Hb_002276_030 0.1398638382 - - PREDICTED: putative U-box domain-containing protein 42 [Jatropha curcas]
16 Hb_000705_010 0.1443497932 - - hypothetical protein CICLE_v10027296mg [Citrus clementina]
17 Hb_000483_430 0.1477996897 - - -
18 Hb_000608_360 0.1478673046 - - calreticulin, putative [Ricinus communis]
19 Hb_000500_360 0.1497395181 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
20 Hb_000037_200 0.1533627588 - - RNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001508_030 Hb_001508_030 Hb_008878_020 Hb_008878_020 Hb_001508_030--Hb_008878_020 Hb_000049_170 Hb_000049_170 Hb_001508_030--Hb_000049_170 Hb_171168_010 Hb_171168_010 Hb_001508_030--Hb_171168_010 Hb_016687_010 Hb_016687_010 Hb_001508_030--Hb_016687_010 Hb_000968_010 Hb_000968_010 Hb_001508_030--Hb_000968_010 Hb_000042_310 Hb_000042_310 Hb_001508_030--Hb_000042_310 Hb_000212_270 Hb_000212_270 Hb_008878_020--Hb_000212_270 Hb_002030_090 Hb_002030_090 Hb_008878_020--Hb_002030_090 Hb_000697_020 Hb_000697_020 Hb_008878_020--Hb_000697_020 Hb_001172_150 Hb_001172_150 Hb_008878_020--Hb_001172_150 Hb_001266_130 Hb_001266_130 Hb_008878_020--Hb_001266_130 Hb_006478_050 Hb_006478_050 Hb_008878_020--Hb_006478_050 Hb_002845_020 Hb_002845_020 Hb_000049_170--Hb_002845_020 Hb_006827_030 Hb_006827_030 Hb_000049_170--Hb_006827_030 Hb_006588_020 Hb_006588_020 Hb_000049_170--Hb_006588_020 Hb_001866_100 Hb_001866_100 Hb_000049_170--Hb_001866_100 Hb_000500_360 Hb_000500_360 Hb_000049_170--Hb_000500_360 Hb_000049_170--Hb_171168_010 Hb_171168_010--Hb_006827_030 Hb_007113_020 Hb_007113_020 Hb_171168_010--Hb_007113_020 Hb_001579_060 Hb_001579_060 Hb_171168_010--Hb_001579_060 Hb_002155_020 Hb_002155_020 Hb_171168_010--Hb_002155_020 Hb_171168_010--Hb_002030_090 Hb_016687_010--Hb_000697_020 Hb_003119_130 Hb_003119_130 Hb_016687_010--Hb_003119_130 Hb_003141_060 Hb_003141_060 Hb_016687_010--Hb_003141_060 Hb_016687_010--Hb_008878_020 Hb_016687_010--Hb_001172_150 Hb_061126_010 Hb_061126_010 Hb_016687_010--Hb_061126_010 Hb_000270_640 Hb_000270_640 Hb_000968_010--Hb_000270_640 Hb_000968_010--Hb_003141_060 Hb_011104_020 Hb_011104_020 Hb_000968_010--Hb_011104_020 Hb_000680_130 Hb_000680_130 Hb_000968_010--Hb_000680_130 Hb_000968_010--Hb_001579_060 Hb_000373_010 Hb_000373_010 Hb_000968_010--Hb_000373_010 Hb_004374_100 Hb_004374_100 Hb_000042_310--Hb_004374_100 Hb_000280_030 Hb_000280_030 Hb_000042_310--Hb_000280_030 Hb_015824_010 Hb_015824_010 Hb_000042_310--Hb_015824_010 Hb_144045_010 Hb_144045_010 Hb_000042_310--Hb_144045_010 Hb_000638_270 Hb_000638_270 Hb_000042_310--Hb_000638_270 Hb_000705_010 Hb_000705_010 Hb_000042_310--Hb_000705_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.29224 0.707308 0.173811 0 0.0367293
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.232975 1.04309

CAGE analysis