Hb_004374_100

Information

Type -
Description -
Location Contig4374: 104518-106486
Sequence    

Annotation

kegg
ID pop:POPTR_0003s13110g
description POPTRDRAFT_712340; hypothetical protein
nr
ID XP_012086843.1
description PREDICTED: phosphoglycerate mutase-like protein AT74H [Jatropha curcas]
swissprot
ID Q9MAA2
description Phosphoglycerate mutase-like protein AT74 OS=Arabidopsis thaliana GN=At3g05170 PE=2 SV=1
trembl
ID A0A067JZG4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20556 PE=4 SV=1
Gene Ontology
ID GO:0003824
description phosphoglycerate mutase-like protein at74h

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42501: 104502-104658 , PASA_asmbl_42502: 104663-105558 , PASA_asmbl_42503: 105659-106057 , PASA_asmbl_42504: 106074-106540
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004374_100 0.0 - - PREDICTED: phosphoglycerate mutase-like protein AT74H [Jatropha curcas]
2 Hb_000042_310 0.0473118225 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
3 Hb_000280_030 0.0557184439 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]
4 Hb_015824_010 0.0954594972 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
5 Hb_000638_270 0.1043292927 - - -
6 Hb_000705_010 0.1047436942 - - hypothetical protein CICLE_v10027296mg [Citrus clementina]
7 Hb_144045_010 0.1073382998 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor NGA1-like [Jatropha curcas]
8 Hb_000227_260 0.1146446006 - - PREDICTED: RAN GTPase-activating protein 2 [Jatropha curcas]
9 Hb_001172_150 0.1252149068 desease resistance Gene Name: ABC_membrane PREDICTED: putative ABC transporter C family member 15 [Jatropha curcas]
10 Hb_061126_010 0.1298724369 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
11 Hb_003299_060 0.1379874807 - - nitrate transporter, putative [Ricinus communis]
12 Hb_000027_110 0.138109716 - - wall-associated kinase, putative [Ricinus communis]
13 Hb_001508_030 0.1384641931 - - hypothetical protein VITISV_029808 [Vitis vinifera]
14 Hb_000697_020 0.1385327454 - - Zinc-binding dehydrogenase family protein isoform 1 [Theobroma cacao]
15 Hb_001040_090 0.139220322 - - PREDICTED: tetraspanin-19-like [Jatropha curcas]
16 Hb_002025_220 0.1450553126 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
17 Hb_002276_030 0.1458645188 - - PREDICTED: putative U-box domain-containing protein 42 [Jatropha curcas]
18 Hb_080922_010 0.1468051728 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
19 Hb_008143_010 0.146934454 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
20 Hb_000116_090 0.1471971175 - - catalase [Hevea brasiliensis]

Gene co-expression network

sample Hb_004374_100 Hb_004374_100 Hb_000042_310 Hb_000042_310 Hb_004374_100--Hb_000042_310 Hb_000280_030 Hb_000280_030 Hb_004374_100--Hb_000280_030 Hb_015824_010 Hb_015824_010 Hb_004374_100--Hb_015824_010 Hb_000638_270 Hb_000638_270 Hb_004374_100--Hb_000638_270 Hb_000705_010 Hb_000705_010 Hb_004374_100--Hb_000705_010 Hb_144045_010 Hb_144045_010 Hb_004374_100--Hb_144045_010 Hb_000042_310--Hb_000280_030 Hb_000042_310--Hb_015824_010 Hb_000042_310--Hb_144045_010 Hb_000042_310--Hb_000638_270 Hb_000042_310--Hb_000705_010 Hb_000280_030--Hb_000638_270 Hb_000280_030--Hb_015824_010 Hb_000280_030--Hb_000705_010 Hb_002025_220 Hb_002025_220 Hb_000280_030--Hb_002025_220 Hb_015824_010--Hb_144045_010 Hb_000027_110 Hb_000027_110 Hb_015824_010--Hb_000027_110 Hb_000207_160 Hb_000207_160 Hb_015824_010--Hb_000207_160 Hb_000638_270--Hb_002025_220 Hb_003106_160 Hb_003106_160 Hb_000638_270--Hb_003106_160 Hb_000227_260 Hb_000227_260 Hb_000638_270--Hb_000227_260 Hb_063405_010 Hb_063405_010 Hb_000705_010--Hb_063405_010 Hb_080922_010 Hb_080922_010 Hb_000705_010--Hb_080922_010 Hb_000270_090 Hb_000270_090 Hb_000705_010--Hb_000270_090 Hb_001321_010 Hb_001321_010 Hb_000705_010--Hb_001321_010 Hb_000697_020 Hb_000697_020 Hb_000705_010--Hb_000697_020 Hb_002010_030 Hb_002010_030 Hb_000705_010--Hb_002010_030 Hb_003299_060 Hb_003299_060 Hb_144045_010--Hb_003299_060 Hb_144045_010--Hb_000280_030 Hb_001691_170 Hb_001691_170 Hb_144045_010--Hb_001691_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0818674 8.01222 22.1979 2.61205 0.0429405 0.0144041
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0651064 0.02561 0 3.61036 34.9857

CAGE analysis