Hb_003106_160

Information

Type -
Description -
Location Contig3106: 119774-122817
Sequence    

Annotation

kegg
ID pop:POPTR_0001s43260g
description POPTRDRAFT_176754; hypothetical protein
nr
ID XP_012077842.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520 [Jatropha curcas]
swissprot
ID Q9LW83
description G-type lectin S-receptor-like serine/threonine-protein kinase CES101 OS=Arabidopsis thaliana GN=CES101 PE=2 SV=2
trembl
ID B9GID8
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0001s43260g PE=4 SV=2
Gene Ontology
ID GO:0016301
description g-type lectin s-receptor-like serine threonine-protein kinase at1g67520

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32887: 119730-120611 , PASA_asmbl_32888: 121185-121978 , PASA_asmbl_32889: 122097-122927
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003106_160 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520 [Jatropha curcas]
2 Hb_000007_270 0.0794085043 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002762_020 0.112754209 - - hypothetical protein VITISV_043202 [Vitis vinifera]
4 Hb_000638_270 0.1206251176 - - -
5 Hb_025325_010 0.1223557589 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
6 Hb_002609_140 0.1260024382 - - PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_007426_070 0.1283840858 - - PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase [Jatropha curcas]
8 Hb_000047_100 0.1303290824 transcription factor TF Family: GRF conserved hypothetical protein [Ricinus communis]
9 Hb_107373_010 0.1306694098 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
10 Hb_107647_010 0.13487762 - - PREDICTED: uncharacterized protein ycf39 [Jatropha curcas]
11 Hb_000227_180 0.1358407551 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Jatropha curcas]
12 Hb_000482_030 0.1359108224 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like isoform X1 [Populus euphratica]
13 Hb_000280_030 0.1361384921 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]
14 Hb_000002_140 0.1380277725 - - hypothetical protein JCGZ_02318 [Jatropha curcas]
15 Hb_001338_130 0.1381283347 - - hypothetical protein MTR_4g129340 [Medicago truncatula]
16 Hb_160045_010 0.1389936327 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000815_110 0.1396309892 - - RecName: Full=Casparian strip membrane protein 4; Short=RcCASP4 [Ricinus communis]
18 Hb_001277_430 0.1427280114 - - PREDICTED: protein IQ-DOMAIN 14 [Jatropha curcas]
19 Hb_002093_020 0.1436106915 - - hypothetical protein POPTR_0008s02960g [Populus trichocarpa]
20 Hb_006665_020 0.144524104 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_003106_160 Hb_003106_160 Hb_000007_270 Hb_000007_270 Hb_003106_160--Hb_000007_270 Hb_002762_020 Hb_002762_020 Hb_003106_160--Hb_002762_020 Hb_000638_270 Hb_000638_270 Hb_003106_160--Hb_000638_270 Hb_025325_010 Hb_025325_010 Hb_003106_160--Hb_025325_010 Hb_002609_140 Hb_002609_140 Hb_003106_160--Hb_002609_140 Hb_007426_070 Hb_007426_070 Hb_003106_160--Hb_007426_070 Hb_000047_100 Hb_000047_100 Hb_000007_270--Hb_000047_100 Hb_140249_020 Hb_140249_020 Hb_000007_270--Hb_140249_020 Hb_000002_140 Hb_000002_140 Hb_000007_270--Hb_000002_140 Hb_000815_110 Hb_000815_110 Hb_000007_270--Hb_000815_110 Hb_001433_080 Hb_001433_080 Hb_000007_270--Hb_001433_080 Hb_000809_190 Hb_000809_190 Hb_002762_020--Hb_000809_190 Hb_000115_020 Hb_000115_020 Hb_002762_020--Hb_000115_020 Hb_002025_220 Hb_002025_220 Hb_002762_020--Hb_002025_220 Hb_002762_020--Hb_000638_270 Hb_000165_170 Hb_000165_170 Hb_002762_020--Hb_000165_170 Hb_000280_030 Hb_000280_030 Hb_000638_270--Hb_000280_030 Hb_000638_270--Hb_002025_220 Hb_004374_100 Hb_004374_100 Hb_000638_270--Hb_004374_100 Hb_000042_310 Hb_000042_310 Hb_000638_270--Hb_000042_310 Hb_000227_260 Hb_000227_260 Hb_000638_270--Hb_000227_260 Hb_001621_090 Hb_001621_090 Hb_025325_010--Hb_001621_090 Hb_160045_010 Hb_160045_010 Hb_025325_010--Hb_160045_010 Hb_005000_120 Hb_005000_120 Hb_025325_010--Hb_005000_120 Hb_006665_020 Hb_006665_020 Hb_025325_010--Hb_006665_020 Hb_006901_020 Hb_006901_020 Hb_025325_010--Hb_006901_020 Hb_001338_130 Hb_001338_130 Hb_025325_010--Hb_001338_130 Hb_005977_040 Hb_005977_040 Hb_002609_140--Hb_005977_040 Hb_000544_070 Hb_000544_070 Hb_002609_140--Hb_000544_070 Hb_002249_090 Hb_002249_090 Hb_002609_140--Hb_002249_090 Hb_004306_090 Hb_004306_090 Hb_002609_140--Hb_004306_090 Hb_107647_010 Hb_107647_010 Hb_002609_140--Hb_107647_010 Hb_117807_020 Hb_117807_020 Hb_002609_140--Hb_117807_020 Hb_000017_210 Hb_000017_210 Hb_007426_070--Hb_000017_210 Hb_000483_440 Hb_000483_440 Hb_007426_070--Hb_000483_440 Hb_004146_030 Hb_004146_030 Hb_007426_070--Hb_004146_030 Hb_000694_080 Hb_000694_080 Hb_007426_070--Hb_000694_080 Hb_000482_030 Hb_000482_030 Hb_007426_070--Hb_000482_030 Hb_000081_110 Hb_000081_110 Hb_007426_070--Hb_000081_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0240828 1.38894 16.1111 1.1204 0.023064 0.0437582
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.164001 0.0860326 0.0273187 1.22446 29.4536

CAGE analysis