Hb_000165_170

Information

Type transcription factor
Description TF Family: G2-like
Location Contig165: 156382-158013
Sequence    

Annotation

kegg
ID pop:POPTR_0010s19310g
description hypothetical protein
nr
ID XP_006378651.1
description hypothetical protein POPTR_0010s19310g [Populus trichocarpa]
swissprot
ID Q700D9
description Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2
trembl
ID U5FZ14
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s19310g PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000165_170 0.0 transcription factor TF Family: G2-like hypothetical protein POPTR_0010s19310g [Populus trichocarpa]
2 Hb_007242_030 0.0827907735 - - PREDICTED: methylesterase 3-like isoform X2 [Tarenaya hassleriana]
3 Hb_001736_010 0.0935788708 - - ring finger protein, putative [Ricinus communis]
4 Hb_001823_010 0.0943668538 - - PREDICTED: ribosome-inactivating protein cucurmosin-like [Jatropha curcas]
5 Hb_003921_010 0.0944371584 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000003_490 0.1022161459 - - PREDICTED: uncharacterized protein LOC105631559 isoform X2 [Jatropha curcas]
7 Hb_005245_110 0.1029721941 - - hypothetical protein CISIN_1g0225141mg [Citrus sinensis]
8 Hb_003020_320 0.1063343041 - - -
9 Hb_061183_010 0.1072957075 - - PREDICTED: uncharacterized protein LOC105775353 [Gossypium raimondii]
10 Hb_000083_020 0.1083264057 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
11 Hb_099335_030 0.1085280538 - - hypothetical protein M569_10107, partial [Genlisea aurea]
12 Hb_001946_230 0.1089197438 - - -
13 Hb_000140_020 0.1089767348 - - BnaA02g09930D [Brassica napus]
14 Hb_004837_230 0.1090197332 - - unknown [Populus trichocarpa]
15 Hb_002056_040 0.1090948741 - - arsenical pump-driving atpase, putative [Ricinus communis]
16 Hb_000313_160 0.109490564 - - BnaC02g20570D [Brassica napus]
17 Hb_000337_020 0.1113650888 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 isoform X2 [Jatropha curcas]
18 Hb_001281_030 0.1119784072 - - hypothetical protein POPTR_0010s18450g [Populus trichocarpa]
19 Hb_003598_060 0.1120144872 - - hypothetical protein POPTR_0006s25370g [Populus trichocarpa]
20 Hb_001433_080 0.1143176058 - - Pectinesterase precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000165_170 Hb_000165_170 Hb_007242_030 Hb_007242_030 Hb_000165_170--Hb_007242_030 Hb_001736_010 Hb_001736_010 Hb_000165_170--Hb_001736_010 Hb_001823_010 Hb_001823_010 Hb_000165_170--Hb_001823_010 Hb_003921_010 Hb_003921_010 Hb_000165_170--Hb_003921_010 Hb_000003_490 Hb_000003_490 Hb_000165_170--Hb_000003_490 Hb_005245_110 Hb_005245_110 Hb_000165_170--Hb_005245_110 Hb_001946_230 Hb_001946_230 Hb_007242_030--Hb_001946_230 Hb_000313_160 Hb_000313_160 Hb_007242_030--Hb_000313_160 Hb_000337_020 Hb_000337_020 Hb_007242_030--Hb_000337_020 Hb_061183_010 Hb_061183_010 Hb_007242_030--Hb_061183_010 Hb_001281_030 Hb_001281_030 Hb_007242_030--Hb_001281_030 Hb_000313_130 Hb_000313_130 Hb_001736_010--Hb_000313_130 Hb_001736_010--Hb_001823_010 Hb_003685_020 Hb_003685_020 Hb_001736_010--Hb_003685_020 Hb_034168_020 Hb_034168_020 Hb_001736_010--Hb_034168_020 Hb_001736_010--Hb_001281_030 Hb_001736_010--Hb_000337_020 Hb_000083_020 Hb_000083_020 Hb_001823_010--Hb_000083_020 Hb_000482_170 Hb_000482_170 Hb_001823_010--Hb_000482_170 Hb_001823_010--Hb_005245_110 Hb_001823_010--Hb_000003_490 Hb_005605_010 Hb_005605_010 Hb_001823_010--Hb_005605_010 Hb_003921_010--Hb_005245_110 Hb_003921_010--Hb_005605_010 Hb_004837_230 Hb_004837_230 Hb_003921_010--Hb_004837_230 Hb_003921_010--Hb_000003_490 Hb_003921_010--Hb_001823_010 Hb_000191_090 Hb_000191_090 Hb_003921_010--Hb_000191_090 Hb_000003_490--Hb_000191_090 Hb_000003_490--Hb_005245_110 Hb_099182_010 Hb_099182_010 Hb_000003_490--Hb_099182_010 Hb_000003_490--Hb_000482_170 Hb_005245_110--Hb_005605_010 Hb_005245_110--Hb_004837_230 Hb_005245_110--Hb_000083_020 Hb_005245_110--Hb_000482_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0149326 2.07475 0.0434422 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0517652 2.80593

CAGE analysis