Hb_140249_020

Information

Type transcription factor
Description TF Family: MIKC
Location Contig140249: 16997-24916
Sequence    

Annotation

kegg
ID tcc:TCM_011478
description MADS-box transcription factor
nr
ID XP_012067820.1
description PREDICTED: MADS-box protein CMB1-like [Jatropha curcas]
swissprot
ID Q39685
description MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1
trembl
ID A0A067LB55
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15741 PE=4 SV=1
Gene Ontology
ID GO:0005634
description mads-box protein cmb1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_140249_020 0.0 transcription factor TF Family: MIKC PREDICTED: MADS-box protein CMB1-like [Jatropha curcas]
2 Hb_001433_080 0.0316913728 - - Pectinesterase precursor, putative [Ricinus communis]
3 Hb_000047_100 0.0502843978 transcription factor TF Family: GRF conserved hypothetical protein [Ricinus communis]
4 Hb_002162_020 0.0749520262 - - hypothetical protein JCGZ_21655 [Jatropha curcas]
5 Hb_000815_110 0.0850488205 - - RecName: Full=Casparian strip membrane protein 4; Short=RcCASP4 [Ricinus communis]
6 Hb_000002_140 0.0865257512 - - hypothetical protein JCGZ_02318 [Jatropha curcas]
7 Hb_000007_270 0.091861528 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006901_010 0.0935806319 - - hypothetical protein JCGZ_20722 [Jatropha curcas]
9 Hb_001089_010 0.093994309 - - PREDICTED: GDSL esterase/lipase 5-like [Jatropha curcas]
10 Hb_001710_010 0.0941798791 - - Uncharacterized protein TCM_001832 [Theobroma cacao]
11 Hb_002014_140 0.0967157535 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
12 Hb_000482_170 0.0968212489 transcription factor TF Family: C2C2-GATA GATA nirate-inducible carbon-metabolism involved protein [Populus nigra x Populus x canadensis]
13 Hb_000083_020 0.0971448944 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
14 Hb_000008_160 0.0977591985 - - carboxy-lyase, putative [Ricinus communis]
15 Hb_004525_010 0.100008281 - - late embryogenesis abundant, putative [Ricinus communis]
16 Hb_004837_230 0.1020821776 - - unknown [Populus trichocarpa]
17 Hb_002893_200 0.1023543708 - - aldehyde dehydrogenase, putative [Ricinus communis]
18 Hb_002870_070 0.102517065 - - multidrug resistance pump, putative [Ricinus communis]
19 Hb_005605_010 0.1031559474 - - hypothetical protein POPTR_0019s13220g [Populus trichocarpa]
20 Hb_001856_240 0.1037634539 transcription factor TF Family: TCP Plastid transcription factor 1, putative isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_140249_020 Hb_140249_020 Hb_001433_080 Hb_001433_080 Hb_140249_020--Hb_001433_080 Hb_000047_100 Hb_000047_100 Hb_140249_020--Hb_000047_100 Hb_002162_020 Hb_002162_020 Hb_140249_020--Hb_002162_020 Hb_000815_110 Hb_000815_110 Hb_140249_020--Hb_000815_110 Hb_000002_140 Hb_000002_140 Hb_140249_020--Hb_000002_140 Hb_000007_270 Hb_000007_270 Hb_140249_020--Hb_000007_270 Hb_001433_080--Hb_000047_100 Hb_006901_010 Hb_006901_010 Hb_001433_080--Hb_006901_010 Hb_000083_020 Hb_000083_020 Hb_001433_080--Hb_000083_020 Hb_002014_140 Hb_002014_140 Hb_001433_080--Hb_002014_140 Hb_002893_200 Hb_002893_200 Hb_001433_080--Hb_002893_200 Hb_006665_020 Hb_006665_020 Hb_000047_100--Hb_006665_020 Hb_000047_100--Hb_000007_270 Hb_001856_240 Hb_001856_240 Hb_000047_100--Hb_001856_240 Hb_001006_160 Hb_001006_160 Hb_000047_100--Hb_001006_160 Hb_002162_020--Hb_000002_140 Hb_001710_010 Hb_001710_010 Hb_002162_020--Hb_001710_010 Hb_000008_160 Hb_000008_160 Hb_002162_020--Hb_000008_160 Hb_002162_020--Hb_001433_080 Hb_001089_010 Hb_001089_010 Hb_002162_020--Hb_001089_010 Hb_000815_110--Hb_001433_080 Hb_000815_110--Hb_000007_270 Hb_000815_110--Hb_000047_100 Hb_002041_020 Hb_002041_020 Hb_000815_110--Hb_002041_020 Hb_000815_110--Hb_001089_010 Hb_000002_140--Hb_001089_010 Hb_012807_030 Hb_012807_030 Hb_000002_140--Hb_012807_030 Hb_000002_140--Hb_000008_160 Hb_000002_140--Hb_000007_270 Hb_003106_160 Hb_003106_160 Hb_000007_270--Hb_003106_160 Hb_000007_270--Hb_001433_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.495648 0.0641681 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0244271 0.836645

CAGE analysis