Hb_002162_020

Information

Type -
Description -
Location Contig2162: 29546-31741
Sequence    

Annotation

kegg
ID vvi:100247046
description protein SRG1
nr
ID KDP21184.1
description hypothetical protein JCGZ_21655 [Jatropha curcas]
swissprot
ID Q39224
description Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1
trembl
ID A0A067JNW1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21655 PE=3 SV=1
Gene Ontology
ID GO:0045431
description protein srg1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002162_020 0.0 - - hypothetical protein JCGZ_21655 [Jatropha curcas]
2 Hb_000002_140 0.0678355482 - - hypothetical protein JCGZ_02318 [Jatropha curcas]
3 Hb_001710_010 0.0693738463 - - Uncharacterized protein TCM_001832 [Theobroma cacao]
4 Hb_140249_020 0.0749520262 transcription factor TF Family: MIKC PREDICTED: MADS-box protein CMB1-like [Jatropha curcas]
5 Hb_000008_160 0.0874082179 - - carboxy-lyase, putative [Ricinus communis]
6 Hb_001433_080 0.0991752156 - - Pectinesterase precursor, putative [Ricinus communis]
7 Hb_001089_010 0.0992247409 - - PREDICTED: GDSL esterase/lipase 5-like [Jatropha curcas]
8 Hb_001751_050 0.0998524316 - - PREDICTED: phytol kinase 1, chloroplastic [Jatropha curcas]
9 Hb_002093_020 0.105693159 - - hypothetical protein POPTR_0008s02960g [Populus trichocarpa]
10 Hb_000047_100 0.1057164638 transcription factor TF Family: GRF conserved hypothetical protein [Ricinus communis]
11 Hb_007101_120 0.1063207982 - - PREDICTED: uncharacterized protein LOC105649846 [Jatropha curcas]
12 Hb_008484_080 0.1066504729 - - PREDICTED: crocetin glucosyltransferase, chloroplastic-like [Jatropha curcas]
13 Hb_099182_010 0.1091532813 - - PREDICTED: uncharacterized protein LOC101214783 [Cucumis sativus]
14 Hb_012807_030 0.112251279 - - PREDICTED: uncharacterized protein LOC105628042 isoform X1 [Jatropha curcas]
15 Hb_023313_050 0.1134706221 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein rcd1-like [Jatropha curcas]
16 Hb_003050_380 0.1146599157 - - hypothetical protein POPTR_0007s03380g [Populus trichocarpa]
17 Hb_002434_040 0.1159541996 - - hypothetical protein CICLE_v10022672mg [Citrus clementina]
18 Hb_009193_020 0.1161268595 - - PREDICTED: epoxide hydrolase 3 [Jatropha curcas]
19 Hb_000985_150 0.1165552596 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
20 Hb_000977_250 0.1167308481 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002162_020 Hb_002162_020 Hb_000002_140 Hb_000002_140 Hb_002162_020--Hb_000002_140 Hb_001710_010 Hb_001710_010 Hb_002162_020--Hb_001710_010 Hb_140249_020 Hb_140249_020 Hb_002162_020--Hb_140249_020 Hb_000008_160 Hb_000008_160 Hb_002162_020--Hb_000008_160 Hb_001433_080 Hb_001433_080 Hb_002162_020--Hb_001433_080 Hb_001089_010 Hb_001089_010 Hb_002162_020--Hb_001089_010 Hb_000002_140--Hb_001089_010 Hb_012807_030 Hb_012807_030 Hb_000002_140--Hb_012807_030 Hb_000002_140--Hb_140249_020 Hb_000002_140--Hb_000008_160 Hb_000007_270 Hb_000007_270 Hb_000002_140--Hb_000007_270 Hb_003050_380 Hb_003050_380 Hb_001710_010--Hb_003050_380 Hb_001170_020 Hb_001170_020 Hb_001710_010--Hb_001170_020 Hb_005754_050 Hb_005754_050 Hb_001710_010--Hb_005754_050 Hb_002592_040 Hb_002592_040 Hb_001710_010--Hb_002592_040 Hb_005888_020 Hb_005888_020 Hb_001710_010--Hb_005888_020 Hb_140249_020--Hb_001433_080 Hb_000047_100 Hb_000047_100 Hb_140249_020--Hb_000047_100 Hb_000815_110 Hb_000815_110 Hb_140249_020--Hb_000815_110 Hb_140249_020--Hb_000007_270 Hb_002093_020 Hb_002093_020 Hb_000008_160--Hb_002093_020 Hb_000185_010 Hb_000185_010 Hb_000008_160--Hb_000185_010 Hb_001751_050 Hb_001751_050 Hb_000008_160--Hb_001751_050 Hb_002870_070 Hb_002870_070 Hb_000008_160--Hb_002870_070 Hb_002762_050 Hb_002762_050 Hb_000008_160--Hb_002762_050 Hb_087599_010 Hb_087599_010 Hb_000008_160--Hb_087599_010 Hb_001433_080--Hb_000047_100 Hb_006901_010 Hb_006901_010 Hb_001433_080--Hb_006901_010 Hb_000083_020 Hb_000083_020 Hb_001433_080--Hb_000083_020 Hb_002014_140 Hb_002014_140 Hb_001433_080--Hb_002014_140 Hb_002893_200 Hb_002893_200 Hb_001433_080--Hb_002893_200 Hb_001089_010--Hb_140249_020 Hb_001089_010--Hb_000815_110 Hb_001089_010--Hb_001433_080 Hb_000165_170 Hb_000165_170 Hb_001089_010--Hb_000165_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.624997 0.0989853 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0341685 0.77009

CAGE analysis