Hb_001089_010

Information

Type -
Description -
Location Contig1089: 6850-8511
Sequence    

Annotation

kegg
ID rcu:RCOM_0708810
description zinc finger protein, putative
nr
ID XP_012077542.1
description PREDICTED: GDSL esterase/lipase 5-like [Jatropha curcas]
swissprot
ID Q9SSA7
description GDSL esterase/lipase 5 OS=Arabidopsis thaliana GN=GLIP5 PE=2 SV=2
trembl
ID B9RR37
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0708810 PE=4 SV=1
Gene Ontology
ID GO:0016788
description gdsl esterase lipase 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001089_010 0.0 - - PREDICTED: GDSL esterase/lipase 5-like [Jatropha curcas]
2 Hb_000002_140 0.0760744617 - - hypothetical protein JCGZ_02318 [Jatropha curcas]
3 Hb_140249_020 0.093994309 transcription factor TF Family: MIKC PREDICTED: MADS-box protein CMB1-like [Jatropha curcas]
4 Hb_002162_020 0.0992247409 - - hypothetical protein JCGZ_21655 [Jatropha curcas]
5 Hb_000815_110 0.1069287874 - - RecName: Full=Casparian strip membrane protein 4; Short=RcCASP4 [Ricinus communis]
6 Hb_001433_080 0.1169424227 - - Pectinesterase precursor, putative [Ricinus communis]
7 Hb_000165_170 0.1178774524 transcription factor TF Family: G2-like hypothetical protein POPTR_0010s19310g [Populus trichocarpa]
8 Hb_000007_270 0.1198696103 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000047_100 0.1278322032 transcription factor TF Family: GRF conserved hypothetical protein [Ricinus communis]
10 Hb_007242_030 0.1432856014 - - PREDICTED: methylesterase 3-like isoform X2 [Tarenaya hassleriana]
11 Hb_012807_030 0.1473506076 - - PREDICTED: uncharacterized protein LOC105628042 isoform X1 [Jatropha curcas]
12 Hb_000008_160 0.1476427928 - - carboxy-lyase, putative [Ricinus communis]
13 Hb_003106_160 0.1536575712 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520 [Jatropha curcas]
14 Hb_007101_120 0.1543818472 - - PREDICTED: uncharacterized protein LOC105649846 [Jatropha curcas]
15 Hb_001823_010 0.1556304532 - - PREDICTED: ribosome-inactivating protein cucurmosin-like [Jatropha curcas]
16 Hb_004837_230 0.1566423695 - - unknown [Populus trichocarpa]
17 Hb_000083_020 0.1573319314 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
18 Hb_001710_010 0.1577699659 - - Uncharacterized protein TCM_001832 [Theobroma cacao]
19 Hb_000003_490 0.1585732663 - - PREDICTED: uncharacterized protein LOC105631559 isoform X2 [Jatropha curcas]
20 Hb_000482_170 0.1591288692 transcription factor TF Family: C2C2-GATA GATA nirate-inducible carbon-metabolism involved protein [Populus nigra x Populus x canadensis]

Gene co-expression network

sample Hb_001089_010 Hb_001089_010 Hb_000002_140 Hb_000002_140 Hb_001089_010--Hb_000002_140 Hb_140249_020 Hb_140249_020 Hb_001089_010--Hb_140249_020 Hb_002162_020 Hb_002162_020 Hb_001089_010--Hb_002162_020 Hb_000815_110 Hb_000815_110 Hb_001089_010--Hb_000815_110 Hb_001433_080 Hb_001433_080 Hb_001089_010--Hb_001433_080 Hb_000165_170 Hb_000165_170 Hb_001089_010--Hb_000165_170 Hb_000002_140--Hb_002162_020 Hb_012807_030 Hb_012807_030 Hb_000002_140--Hb_012807_030 Hb_000002_140--Hb_140249_020 Hb_000008_160 Hb_000008_160 Hb_000002_140--Hb_000008_160 Hb_000007_270 Hb_000007_270 Hb_000002_140--Hb_000007_270 Hb_140249_020--Hb_001433_080 Hb_000047_100 Hb_000047_100 Hb_140249_020--Hb_000047_100 Hb_140249_020--Hb_002162_020 Hb_140249_020--Hb_000815_110 Hb_140249_020--Hb_000007_270 Hb_001710_010 Hb_001710_010 Hb_002162_020--Hb_001710_010 Hb_002162_020--Hb_000008_160 Hb_002162_020--Hb_001433_080 Hb_000815_110--Hb_001433_080 Hb_000815_110--Hb_000007_270 Hb_000815_110--Hb_000047_100 Hb_002041_020 Hb_002041_020 Hb_000815_110--Hb_002041_020 Hb_001433_080--Hb_000047_100 Hb_006901_010 Hb_006901_010 Hb_001433_080--Hb_006901_010 Hb_000083_020 Hb_000083_020 Hb_001433_080--Hb_000083_020 Hb_002014_140 Hb_002014_140 Hb_001433_080--Hb_002014_140 Hb_002893_200 Hb_002893_200 Hb_001433_080--Hb_002893_200 Hb_007242_030 Hb_007242_030 Hb_000165_170--Hb_007242_030 Hb_001736_010 Hb_001736_010 Hb_000165_170--Hb_001736_010 Hb_001823_010 Hb_001823_010 Hb_000165_170--Hb_001823_010 Hb_003921_010 Hb_003921_010 Hb_000165_170--Hb_003921_010 Hb_000003_490 Hb_000003_490 Hb_000165_170--Hb_000003_490 Hb_005245_110 Hb_005245_110 Hb_000165_170--Hb_005245_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.451125 0.029278 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0529033 0.613654

CAGE analysis