Hb_000815_110

Information

Type -
Description -
Location Contig815: 135509-136280
Sequence    

Annotation

kegg
ID tcc:TCM_011675
description Casparian strip membrane protein 5, putative isoform 1
nr
ID B9S8Z3.2
description RecName: Full=Casparian strip membrane protein 4; Short=RcCASP4 [Ricinus communis]
swissprot
ID B9S8Z3
description Casparian strip membrane protein 4 OS=Ricinus communis GN=RCOM_0837390 PE=2 SV=2
trembl
ID A0A061EHU5
description CASP-like protein OS=Theobroma cacao GN=TCM_011675 PE=3 SV=1
Gene Ontology
ID GO:0005886
description casparian strip membrane protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59355: 135931-136109
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000815_110 0.0 - - RecName: Full=Casparian strip membrane protein 4; Short=RcCASP4 [Ricinus communis]
2 Hb_140249_020 0.0850488205 transcription factor TF Family: MIKC PREDICTED: MADS-box protein CMB1-like [Jatropha curcas]
3 Hb_001433_080 0.085787911 - - Pectinesterase precursor, putative [Ricinus communis]
4 Hb_000007_270 0.0955858899 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000047_100 0.0958191094 transcription factor TF Family: GRF conserved hypothetical protein [Ricinus communis]
6 Hb_002041_020 0.1011521633 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
7 Hb_001089_010 0.1069287874 - - PREDICTED: GDSL esterase/lipase 5-like [Jatropha curcas]
8 Hb_000037_090 0.1152254618 - - Na(+)/H(+) antiporter, putative [Ricinus communis]
9 Hb_007595_040 0.1195886779 - - ribosomal protein L2 (chloroplast) [Berberis bealei]
10 Hb_052469_020 0.1202269005 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2 [Vitis vinifera]
11 Hb_008566_060 0.1215701823 - - conserved hypothetical protein [Ricinus communis]
12 Hb_185830_050 0.1219535092 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 [Jatropha curcas]
13 Hb_000326_110 0.1227958937 - - PREDICTED: uncharacterized protein LOC105632350 [Jatropha curcas]
14 Hb_080791_010 0.1245702335 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
15 Hb_000313_130 0.1284943275 - - zinc finger protein, putative [Ricinus communis]
16 Hb_027403_010 0.1286878308 - - P66 protein [Hevea brasiliensis]
17 Hb_001279_380 0.1287131813 - - PREDICTED: uncharacterized protein LOC105115824 isoform X1 [Populus euphratica]
18 Hb_000165_170 0.128934033 transcription factor TF Family: G2-like hypothetical protein POPTR_0010s19310g [Populus trichocarpa]
19 Hb_000139_010 0.1298755436 - - -
20 Hb_000083_020 0.1324014195 - - hypothetical protein JCGZ_24970 [Jatropha curcas]

Gene co-expression network

sample Hb_000815_110 Hb_000815_110 Hb_140249_020 Hb_140249_020 Hb_000815_110--Hb_140249_020 Hb_001433_080 Hb_001433_080 Hb_000815_110--Hb_001433_080 Hb_000007_270 Hb_000007_270 Hb_000815_110--Hb_000007_270 Hb_000047_100 Hb_000047_100 Hb_000815_110--Hb_000047_100 Hb_002041_020 Hb_002041_020 Hb_000815_110--Hb_002041_020 Hb_001089_010 Hb_001089_010 Hb_000815_110--Hb_001089_010 Hb_140249_020--Hb_001433_080 Hb_140249_020--Hb_000047_100 Hb_002162_020 Hb_002162_020 Hb_140249_020--Hb_002162_020 Hb_000002_140 Hb_000002_140 Hb_140249_020--Hb_000002_140 Hb_140249_020--Hb_000007_270 Hb_001433_080--Hb_000047_100 Hb_006901_010 Hb_006901_010 Hb_001433_080--Hb_006901_010 Hb_000083_020 Hb_000083_020 Hb_001433_080--Hb_000083_020 Hb_002014_140 Hb_002014_140 Hb_001433_080--Hb_002014_140 Hb_002893_200 Hb_002893_200 Hb_001433_080--Hb_002893_200 Hb_000007_270--Hb_000047_100 Hb_003106_160 Hb_003106_160 Hb_000007_270--Hb_003106_160 Hb_000007_270--Hb_000002_140 Hb_000007_270--Hb_001433_080 Hb_006665_020 Hb_006665_020 Hb_000047_100--Hb_006665_020 Hb_001856_240 Hb_001856_240 Hb_000047_100--Hb_001856_240 Hb_001006_160 Hb_001006_160 Hb_000047_100--Hb_001006_160 Hb_001832_180 Hb_001832_180 Hb_002041_020--Hb_001832_180 Hb_000037_090 Hb_000037_090 Hb_002041_020--Hb_000037_090 Hb_080791_010 Hb_080791_010 Hb_002041_020--Hb_080791_010 Hb_000326_110 Hb_000326_110 Hb_002041_020--Hb_000326_110 Hb_000282_100 Hb_000282_100 Hb_002041_020--Hb_000282_100 Hb_000026_060 Hb_000026_060 Hb_002041_020--Hb_000026_060 Hb_001089_010--Hb_000002_140 Hb_001089_010--Hb_140249_020 Hb_001089_010--Hb_002162_020 Hb_001089_010--Hb_001433_080 Hb_000165_170 Hb_000165_170 Hb_001089_010--Hb_000165_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.721309 0.0514285 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0688107 1.61047

CAGE analysis