Hb_000047_100

Information

Type transcription factor
Description TF Family: GRF
Location Contig47: 335446-337299
Sequence    

Annotation

kegg
ID rcu:RCOM_1313650
description hypothetical protein
nr
ID XP_002518921.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SU44
description Growth-regulating factor 8 OS=Arabidopsis thaliana GN=GRF8 PE=2 SV=1
trembl
ID B9RYV2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1313650 PE=4 SV=1
Gene Ontology
ID GO:0005634
description growth-regulating factor isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000047_100 0.0 transcription factor TF Family: GRF conserved hypothetical protein [Ricinus communis]
2 Hb_001433_080 0.0435760338 - - Pectinesterase precursor, putative [Ricinus communis]
3 Hb_140249_020 0.0502843978 transcription factor TF Family: MIKC PREDICTED: MADS-box protein CMB1-like [Jatropha curcas]
4 Hb_006665_020 0.0712906377 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
5 Hb_000007_270 0.0760564457 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001856_240 0.0769662918 transcription factor TF Family: TCP Plastid transcription factor 1, putative isoform 1 [Theobroma cacao]
7 Hb_001006_160 0.0777490436 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
8 Hb_000640_090 0.0796025795 - - PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]
9 Hb_004525_010 0.0804800755 - - late embryogenesis abundant, putative [Ricinus communis]
10 Hb_107748_010 0.0835118879 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
11 Hb_002893_200 0.0837394438 - - aldehyde dehydrogenase, putative [Ricinus communis]
12 Hb_005605_010 0.0841203181 - - hypothetical protein POPTR_0019s13220g [Populus trichocarpa]
13 Hb_002014_140 0.0851693296 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
14 Hb_006901_010 0.0857169509 - - hypothetical protein JCGZ_20722 [Jatropha curcas]
15 Hb_004837_230 0.0865418626 - - unknown [Populus trichocarpa]
16 Hb_000083_020 0.0872929836 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
17 Hb_005605_020 0.0915726967 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
18 Hb_005276_080 0.0926738892 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Jatropha curcas]
19 Hb_000008_160 0.0929425118 - - carboxy-lyase, putative [Ricinus communis]
20 Hb_001046_060 0.0931792254 - - PREDICTED: UDP-glucose flavonoid 3-O-glucosyltransferase 7-like [Fragaria vesca subsp. vesca]

Gene co-expression network

sample Hb_000047_100 Hb_000047_100 Hb_001433_080 Hb_001433_080 Hb_000047_100--Hb_001433_080 Hb_140249_020 Hb_140249_020 Hb_000047_100--Hb_140249_020 Hb_006665_020 Hb_006665_020 Hb_000047_100--Hb_006665_020 Hb_000007_270 Hb_000007_270 Hb_000047_100--Hb_000007_270 Hb_001856_240 Hb_001856_240 Hb_000047_100--Hb_001856_240 Hb_001006_160 Hb_001006_160 Hb_000047_100--Hb_001006_160 Hb_001433_080--Hb_140249_020 Hb_006901_010 Hb_006901_010 Hb_001433_080--Hb_006901_010 Hb_000083_020 Hb_000083_020 Hb_001433_080--Hb_000083_020 Hb_002014_140 Hb_002014_140 Hb_001433_080--Hb_002014_140 Hb_002893_200 Hb_002893_200 Hb_001433_080--Hb_002893_200 Hb_002162_020 Hb_002162_020 Hb_140249_020--Hb_002162_020 Hb_000815_110 Hb_000815_110 Hb_140249_020--Hb_000815_110 Hb_000002_140 Hb_000002_140 Hb_140249_020--Hb_000002_140 Hb_140249_020--Hb_000007_270 Hb_001621_090 Hb_001621_090 Hb_006665_020--Hb_001621_090 Hb_005276_080 Hb_005276_080 Hb_006665_020--Hb_005276_080 Hb_006665_020--Hb_001006_160 Hb_005605_010 Hb_005605_010 Hb_006665_020--Hb_005605_010 Hb_000450_050 Hb_000450_050 Hb_006665_020--Hb_000450_050 Hb_004837_230 Hb_004837_230 Hb_006665_020--Hb_004837_230 Hb_003106_160 Hb_003106_160 Hb_000007_270--Hb_003106_160 Hb_000007_270--Hb_000002_140 Hb_000007_270--Hb_000815_110 Hb_000007_270--Hb_001433_080 Hb_008748_050 Hb_008748_050 Hb_001856_240--Hb_008748_050 Hb_176135_010 Hb_176135_010 Hb_001856_240--Hb_176135_010 Hb_003847_070 Hb_003847_070 Hb_001856_240--Hb_003847_070 Hb_000012_370 Hb_000012_370 Hb_001856_240--Hb_000012_370 Hb_001856_240--Hb_001006_160 Hb_002870_070 Hb_002870_070 Hb_001856_240--Hb_002870_070 Hb_001006_160--Hb_005276_080 Hb_002785_040 Hb_002785_040 Hb_001006_160--Hb_002785_040 Hb_003747_090 Hb_003747_090 Hb_001006_160--Hb_003747_090 Hb_002592_040 Hb_002592_040 Hb_001006_160--Hb_002592_040 Hb_000083_180 Hb_000083_180 Hb_001006_160--Hb_000083_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0114812 1.16365 0.167423 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0396896 2.18297

CAGE analysis