Hb_003847_070

Information

Type -
Description -
Location Contig3847: 42283-46298
Sequence    

Annotation

kegg
ID rcu:RCOM_1122510
description hypothetical protein
nr
ID XP_012092715.1
description PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
swissprot
ID Q39249
description Violaxanthin de-epoxidase, chloroplastic OS=Arabidopsis thaliana GN=VDE1 PE=1 SV=1
trembl
ID A0A067J966
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06873 PE=4 SV=1
Gene Ontology
ID GO:0009534
description violaxanthin de- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38718: 42189-46373 , PASA_asmbl_38719: 43767-45331 , PASA_asmbl_38720: 43767-45241 , PASA_asmbl_38721: 42876-43140 , PASA_asmbl_38723: 44041-44213
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003847_070 0.0 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
2 Hb_176135_010 0.0601501924 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
3 Hb_001856_240 0.0675332838 transcription factor TF Family: TCP Plastid transcription factor 1, putative isoform 1 [Theobroma cacao]
4 Hb_000083_180 0.0690146203 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
5 Hb_003020_120 0.0696576508 - - PREDICTED: protein TIC 62, chloroplastic [Populus euphratica]
6 Hb_008748_050 0.0711211817 - - PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Populus euphratica]
7 Hb_000221_130 0.0782881576 - - thylakoid lumenal 29 kDa protein, chloroplastic [Jatropha curcas]
8 Hb_011344_030 0.07921744 - - PREDICTED: elongation factor G-2, chloroplastic [Jatropha curcas]
9 Hb_000012_370 0.0800585573 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000320_370 0.081045076 - - PREDICTED: ATP synthase gamma chain, chloroplastic [Jatropha curcas]
11 Hb_001006_160 0.0818286646 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
12 Hb_002785_040 0.0826657443 - - sedoheptulose-1,7-bisphosphatase, chloroplast, putative [Ricinus communis]
13 Hb_086022_020 0.0828588448 - - RecName: Full=Ribulose bisphosphate carboxylase small chain, chloroplastic; Short=RuBisCO small subunit; Flags: Precursor [Hevea brasiliensis]
14 Hb_027380_080 0.0829423215 - - hypothetical protein JCGZ_04649 [Jatropha curcas]
15 Hb_001269_480 0.0859911329 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Jatropha curcas]
16 Hb_005375_090 0.0862586294 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
17 Hb_007044_270 0.0865604251 - - PREDICTED: uncharacterized protein LOC105638707 isoform X2 [Jatropha curcas]
18 Hb_003747_090 0.0885930403 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]
19 Hb_002870_070 0.0898088733 - - multidrug resistance pump, putative [Ricinus communis]
20 Hb_013405_110 0.0908908865 - - multidrug resistance pump, putative [Ricinus communis]

Gene co-expression network

sample Hb_003847_070 Hb_003847_070 Hb_176135_010 Hb_176135_010 Hb_003847_070--Hb_176135_010 Hb_001856_240 Hb_001856_240 Hb_003847_070--Hb_001856_240 Hb_000083_180 Hb_000083_180 Hb_003847_070--Hb_000083_180 Hb_003020_120 Hb_003020_120 Hb_003847_070--Hb_003020_120 Hb_008748_050 Hb_008748_050 Hb_003847_070--Hb_008748_050 Hb_000221_130 Hb_000221_130 Hb_003847_070--Hb_000221_130 Hb_176135_010--Hb_008748_050 Hb_000012_370 Hb_000012_370 Hb_176135_010--Hb_000012_370 Hb_086022_020 Hb_086022_020 Hb_176135_010--Hb_086022_020 Hb_002785_040 Hb_002785_040 Hb_176135_010--Hb_002785_040 Hb_000251_160 Hb_000251_160 Hb_176135_010--Hb_000251_160 Hb_001856_240--Hb_008748_050 Hb_001856_240--Hb_176135_010 Hb_001856_240--Hb_000012_370 Hb_001006_160 Hb_001006_160 Hb_001856_240--Hb_001006_160 Hb_002870_070 Hb_002870_070 Hb_001856_240--Hb_002870_070 Hb_000230_420 Hb_000230_420 Hb_000083_180--Hb_000230_420 Hb_000083_180--Hb_003020_120 Hb_000083_180--Hb_001006_160 Hb_000676_320 Hb_000676_320 Hb_000083_180--Hb_000676_320 Hb_117807_020 Hb_117807_020 Hb_000083_180--Hb_117807_020 Hb_005276_080 Hb_005276_080 Hb_000083_180--Hb_005276_080 Hb_013405_110 Hb_013405_110 Hb_003020_120--Hb_013405_110 Hb_004899_190 Hb_004899_190 Hb_003020_120--Hb_004899_190 Hb_000948_240 Hb_000948_240 Hb_003020_120--Hb_000948_240 Hb_002592_040 Hb_002592_040 Hb_003020_120--Hb_002592_040 Hb_008748_050--Hb_086022_020 Hb_003090_050 Hb_003090_050 Hb_008748_050--Hb_003090_050 Hb_000111_460 Hb_000111_460 Hb_008748_050--Hb_000111_460 Hb_000923_030 Hb_000923_030 Hb_008748_050--Hb_000923_030 Hb_008748_050--Hb_000012_370 Hb_001269_480 Hb_001269_480 Hb_000221_130--Hb_001269_480 Hb_007044_020 Hb_007044_020 Hb_000221_130--Hb_007044_020 Hb_008948_130 Hb_008948_130 Hb_000221_130--Hb_008948_130 Hb_010812_030 Hb_010812_030 Hb_000221_130--Hb_010812_030 Hb_001310_020 Hb_001310_020 Hb_000221_130--Hb_001310_020 Hb_001191_060 Hb_001191_060 Hb_000221_130--Hb_001191_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.112469 0.587248 24.2048 8.20172 0.273029 0.15908
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.136929 0.107739 0.17021 0.435821 55.3128

CAGE analysis