Hb_003020_120

Information

Type -
Description -
Location Contig3020: 85705-88249
Sequence    

Annotation

kegg
ID rcu:RCOM_0733140
description hypothetical protein
nr
ID XP_011032243.1
description PREDICTED: protein TIC 62, chloroplastic [Populus euphratica]
swissprot
ID Q8SKU2
description Protein TIC 62, chloroplastic OS=Pisum sativum GN=TIC62 PE=1 SV=2
trembl
ID B9S3E7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0733140 PE=4 SV=1
Gene Ontology
ID GO:0009508
description protein tic chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31844: 85728-88335
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003020_120 0.0 - - PREDICTED: protein TIC 62, chloroplastic [Populus euphratica]
2 Hb_000083_180 0.059759866 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
3 Hb_013405_110 0.0619307054 - - multidrug resistance pump, putative [Ricinus communis]
4 Hb_004899_190 0.0630341636 - - RecName: Full=Peroxiredoxin Q, chloroplastic; AltName: Full=Thioredoxin reductase; Flags: Precursor [Populus x jackii]
5 Hb_000948_240 0.0686432556 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003847_070 0.0696576508 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
7 Hb_002592_040 0.0697398672 - - ACC oxidase 3 [Hevea brasiliensis]
8 Hb_005375_090 0.0707443237 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
9 Hb_002785_040 0.0716239387 - - sedoheptulose-1,7-bisphosphatase, chloroplast, putative [Ricinus communis]
10 Hb_000230_420 0.0730966721 - - GS [Hevea brasiliensis subsp. brasiliensis]
11 Hb_003747_090 0.0750290345 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]
12 Hb_027380_080 0.077052196 - - hypothetical protein JCGZ_04649 [Jatropha curcas]
13 Hb_000703_340 0.079658768 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
14 Hb_001006_160 0.0805419866 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
15 Hb_010326_020 0.0812652872 - - PREDICTED: thioredoxin-like 4, chloroplastic [Jatropha curcas]
16 Hb_007044_270 0.081916891 - - PREDICTED: uncharacterized protein LOC105638707 isoform X2 [Jatropha curcas]
17 Hb_000881_070 0.0823367654 - - nucleic acid binding protein, putative [Ricinus communis]
18 Hb_000676_320 0.0827861962 - - MADS-box transcription factor, partial [Clutia sp. DAV B80.252/F1980.8371]
19 Hb_004452_070 0.0832200733 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
20 Hb_000320_370 0.0841197 - - PREDICTED: ATP synthase gamma chain, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003020_120 Hb_003020_120 Hb_000083_180 Hb_000083_180 Hb_003020_120--Hb_000083_180 Hb_013405_110 Hb_013405_110 Hb_003020_120--Hb_013405_110 Hb_004899_190 Hb_004899_190 Hb_003020_120--Hb_004899_190 Hb_000948_240 Hb_000948_240 Hb_003020_120--Hb_000948_240 Hb_003847_070 Hb_003847_070 Hb_003020_120--Hb_003847_070 Hb_002592_040 Hb_002592_040 Hb_003020_120--Hb_002592_040 Hb_000230_420 Hb_000230_420 Hb_000083_180--Hb_000230_420 Hb_001006_160 Hb_001006_160 Hb_000083_180--Hb_001006_160 Hb_000676_320 Hb_000676_320 Hb_000083_180--Hb_000676_320 Hb_117807_020 Hb_117807_020 Hb_000083_180--Hb_117807_020 Hb_005276_080 Hb_005276_080 Hb_000083_180--Hb_005276_080 Hb_003747_090 Hb_003747_090 Hb_013405_110--Hb_003747_090 Hb_002785_040 Hb_002785_040 Hb_013405_110--Hb_002785_040 Hb_005375_090 Hb_005375_090 Hb_013405_110--Hb_005375_090 Hb_002400_200 Hb_002400_200 Hb_013405_110--Hb_002400_200 Hb_000703_340 Hb_000703_340 Hb_013405_110--Hb_000703_340 Hb_013405_110--Hb_002592_040 Hb_004899_190--Hb_000703_340 Hb_004452_070 Hb_004452_070 Hb_004899_190--Hb_004452_070 Hb_000979_120 Hb_000979_120 Hb_004899_190--Hb_000979_120 Hb_004899_190--Hb_013405_110 Hb_001936_100 Hb_001936_100 Hb_004899_190--Hb_001936_100 Hb_000948_240--Hb_002592_040 Hb_001862_040 Hb_001862_040 Hb_000948_240--Hb_001862_040 Hb_000948_240--Hb_005375_090 Hb_000948_240--Hb_003747_090 Hb_000334_290 Hb_000334_290 Hb_000948_240--Hb_000334_290 Hb_000948_240--Hb_013405_110 Hb_176135_010 Hb_176135_010 Hb_003847_070--Hb_176135_010 Hb_001856_240 Hb_001856_240 Hb_003847_070--Hb_001856_240 Hb_003847_070--Hb_000083_180 Hb_008748_050 Hb_008748_050 Hb_003847_070--Hb_008748_050 Hb_000221_130 Hb_000221_130 Hb_003847_070--Hb_000221_130 Hb_002592_040--Hb_005375_090 Hb_002592_040--Hb_001006_160 Hb_002592_040--Hb_001862_040 Hb_002592_040--Hb_003747_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.225012 0.415425 28.8537 10.8081 0.0462513 0.107705
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.267002 0.168057 0.158639 0.0753367 53.68

CAGE analysis