Hb_004899_190

Information

Type -
Description -
Location Contig4899: 166370-168623
Sequence    

Annotation

kegg
ID pop:POPTR_0006s13980g
description peroxiredoxin Q family protein
nr
ID Q6QPJ6.1
description RecName: Full=Peroxiredoxin Q, chloroplastic; AltName: Full=Thioredoxin reductase; Flags: Precursor [Populus x jackii]
swissprot
ID Q6QPJ6
description Peroxiredoxin Q, chloroplastic OS=Populus jackii GN=PRXQ PE=1 SV=1
trembl
ID A9PJX8
description Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1
Gene Ontology
ID GO:0016209
description peroxiredoxin chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45199: 166496-168732 , PASA_asmbl_45200: 165556-168188 , PASA_asmbl_45201: 167019-168172
cDNA
(Sanger)
(ID:Location)		 010_K23.ab1: 166791-168575 , 013_O08.ab1: 168136-168594

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004899_190 0.0 - - RecName: Full=Peroxiredoxin Q, chloroplastic; AltName: Full=Thioredoxin reductase; Flags: Precursor [Populus x jackii]
2 Hb_000703_340 0.0598723138 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
3 Hb_004452_070 0.061700953 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
4 Hb_003020_120 0.0630341636 - - PREDICTED: protein TIC 62, chloroplastic [Populus euphratica]
5 Hb_000979_120 0.0641206657 - - Pectinesterase-1 precursor, putative [Ricinus communis]
6 Hb_013405_110 0.0653500149 - - multidrug resistance pump, putative [Ricinus communis]
7 Hb_001936_100 0.0654164247 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000251_150 0.0679978098 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
9 Hb_001049_130 0.0699118068 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
10 Hb_005743_050 0.0701352996 - - unnamed protein product [Coffea canephora]
11 Hb_001053_070 0.0701645811 desease resistance Gene Name: NB-ARC hypothetical protein EUGRSUZ_B02976 [Eucalyptus grandis]
12 Hb_000373_210 0.0729115494 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
13 Hb_000987_030 0.0731331853 transcription factor TF Family: BES1 hypothetical protein POPTR_0016s13350g [Populus trichocarpa]
14 Hb_002400_200 0.0736256278 - - 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis]
15 Hb_002534_020 0.0763267749 - - PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Gossypium raimondii]
16 Hb_031862_220 0.0768040388 - - PREDICTED: cyclin-D4-1-like [Jatropha curcas]
17 Hb_000139_170 0.0771388833 - - PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]
18 Hb_005375_090 0.0791366468 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
19 Hb_003186_030 0.0799119692 transcription factor TF Family: MYB hypothetical protein POPTR_0012s05720g [Populus trichocarpa]
20 Hb_002374_480 0.0799889252 - - Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_004899_190 Hb_004899_190 Hb_000703_340 Hb_000703_340 Hb_004899_190--Hb_000703_340 Hb_004452_070 Hb_004452_070 Hb_004899_190--Hb_004452_070 Hb_003020_120 Hb_003020_120 Hb_004899_190--Hb_003020_120 Hb_000979_120 Hb_000979_120 Hb_004899_190--Hb_000979_120 Hb_013405_110 Hb_013405_110 Hb_004899_190--Hb_013405_110 Hb_001936_100 Hb_001936_100 Hb_004899_190--Hb_001936_100 Hb_000703_340--Hb_001936_100 Hb_002014_150 Hb_002014_150 Hb_000703_340--Hb_002014_150 Hb_163566_020 Hb_163566_020 Hb_000703_340--Hb_163566_020 Hb_002400_200 Hb_002400_200 Hb_000703_340--Hb_002400_200 Hb_000139_170 Hb_000139_170 Hb_000703_340--Hb_000139_170 Hb_005743_050 Hb_005743_050 Hb_000703_340--Hb_005743_050 Hb_003186_030 Hb_003186_030 Hb_004452_070--Hb_003186_030 Hb_000251_150 Hb_000251_150 Hb_004452_070--Hb_000251_150 Hb_006132_080 Hb_006132_080 Hb_004452_070--Hb_006132_080 Hb_004452_070--Hb_001936_100 Hb_001049_130 Hb_001049_130 Hb_004452_070--Hb_001049_130 Hb_004452_070--Hb_000703_340 Hb_000083_180 Hb_000083_180 Hb_003020_120--Hb_000083_180 Hb_003020_120--Hb_013405_110 Hb_000948_240 Hb_000948_240 Hb_003020_120--Hb_000948_240 Hb_003847_070 Hb_003847_070 Hb_003020_120--Hb_003847_070 Hb_002592_040 Hb_002592_040 Hb_003020_120--Hb_002592_040 Hb_000987_030 Hb_000987_030 Hb_000979_120--Hb_000987_030 Hb_000979_120--Hb_000251_150 Hb_000979_120--Hb_005743_050 Hb_000979_120--Hb_001049_130 Hb_029879_020 Hb_029879_020 Hb_000979_120--Hb_029879_020 Hb_031862_220 Hb_031862_220 Hb_000979_120--Hb_031862_220 Hb_003747_090 Hb_003747_090 Hb_013405_110--Hb_003747_090 Hb_002785_040 Hb_002785_040 Hb_013405_110--Hb_002785_040 Hb_005375_090 Hb_005375_090 Hb_013405_110--Hb_005375_090 Hb_013405_110--Hb_002400_200 Hb_013405_110--Hb_000703_340 Hb_013405_110--Hb_002592_040 Hb_001936_100--Hb_002400_200 Hb_001053_070 Hb_001053_070 Hb_001936_100--Hb_001053_070 Hb_001936_100--Hb_001049_130 Hb_000373_210 Hb_000373_210 Hb_001936_100--Hb_000373_210 Hb_001936_100--Hb_031862_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.229904 0.597781 166.811 87.855 0 0.123161
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.47283 1.55574 0.614784 0.225547 346.575

CAGE analysis