Hb_006665_020

Information

Type -
Description -
Location Contig6665: 71943-73751
Sequence    

Annotation

kegg
ID cic:CICLE_v10030988mg
description hypothetical protein
nr
ID XP_012080984.1
description PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
swissprot
ID F4I9E1
description Protein NUCLEAR FUSION DEFECTIVE 4 OS=Arabidopsis thaliana GN=NFD4 PE=3 SV=1
trembl
ID A0A067K2P1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16170 PE=4 SV=1
Gene Ontology
ID GO:0009506
description protein nuclear fusion defective 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53271: 72186-72809
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006665_020 0.0 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
2 Hb_001621_090 0.046050364 - - hypothetical protein POPTR_0010s20810g [Populus trichocarpa]
3 Hb_005276_080 0.0500516252 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Jatropha curcas]
4 Hb_001006_160 0.0563676055 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
5 Hb_005605_010 0.0589383913 - - hypothetical protein POPTR_0019s13220g [Populus trichocarpa]
6 Hb_000450_050 0.059909384 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
7 Hb_004837_230 0.0679973653 - - unknown [Populus trichocarpa]
8 Hb_000047_100 0.0712906377 transcription factor TF Family: GRF conserved hypothetical protein [Ricinus communis]
9 Hb_004525_010 0.0716365027 - - late embryogenesis abundant, putative [Ricinus communis]
10 Hb_005245_110 0.0716735189 - - hypothetical protein CISIN_1g0225141mg [Citrus sinensis]
11 Hb_107748_010 0.0726292383 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
12 Hb_000640_090 0.0743718598 - - PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]
13 Hb_005605_020 0.0774033545 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
14 Hb_007101_120 0.0784892181 - - PREDICTED: uncharacterized protein LOC105649846 [Jatropha curcas]
15 Hb_025325_010 0.0788444502 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
16 Hb_020805_050 0.0813430371 - - PREDICTED: MLO-like protein 9 [Jatropha curcas]
17 Hb_006901_010 0.0813752501 - - hypothetical protein JCGZ_20722 [Jatropha curcas]
18 Hb_005000_120 0.0816970706 transcription factor TF Family: C2C2-GATA hypothetical protein RCOM_1046780 [Ricinus communis]
19 Hb_001046_060 0.0820865023 - - PREDICTED: UDP-glucose flavonoid 3-O-glucosyltransferase 7-like [Fragaria vesca subsp. vesca]
20 Hb_000589_340 0.082152966 - - unknown [Populus trichocarpa x Populus deltoides]

Gene co-expression network

sample Hb_006665_020 Hb_006665_020 Hb_001621_090 Hb_001621_090 Hb_006665_020--Hb_001621_090 Hb_005276_080 Hb_005276_080 Hb_006665_020--Hb_005276_080 Hb_001006_160 Hb_001006_160 Hb_006665_020--Hb_001006_160 Hb_005605_010 Hb_005605_010 Hb_006665_020--Hb_005605_010 Hb_000450_050 Hb_000450_050 Hb_006665_020--Hb_000450_050 Hb_004837_230 Hb_004837_230 Hb_006665_020--Hb_004837_230 Hb_005000_120 Hb_005000_120 Hb_001621_090--Hb_005000_120 Hb_001621_090--Hb_000450_050 Hb_005605_020 Hb_005605_020 Hb_001621_090--Hb_005605_020 Hb_001046_060 Hb_001046_060 Hb_001621_090--Hb_001046_060 Hb_025325_010 Hb_025325_010 Hb_001621_090--Hb_025325_010 Hb_005276_080--Hb_001006_160 Hb_000531_100 Hb_000531_100 Hb_005276_080--Hb_000531_100 Hb_005276_080--Hb_000450_050 Hb_000589_340 Hb_000589_340 Hb_005276_080--Hb_000589_340 Hb_000676_320 Hb_000676_320 Hb_005276_080--Hb_000676_320 Hb_002785_040 Hb_002785_040 Hb_001006_160--Hb_002785_040 Hb_003747_090 Hb_003747_090 Hb_001006_160--Hb_003747_090 Hb_002592_040 Hb_002592_040 Hb_001006_160--Hb_002592_040 Hb_000083_180 Hb_000083_180 Hb_001006_160--Hb_000083_180 Hb_005245_110 Hb_005245_110 Hb_005605_010--Hb_005245_110 Hb_000083_020 Hb_000083_020 Hb_005605_010--Hb_000083_020 Hb_000482_170 Hb_000482_170 Hb_005605_010--Hb_000482_170 Hb_005605_010--Hb_004837_230 Hb_006901_010 Hb_006901_010 Hb_005605_010--Hb_006901_010 Hb_003921_010 Hb_003921_010 Hb_005605_010--Hb_003921_010 Hb_000450_050--Hb_000589_340 Hb_000450_050--Hb_005000_120 Hb_008748_050 Hb_008748_050 Hb_000450_050--Hb_008748_050 Hb_004837_230--Hb_005245_110 Hb_004837_230--Hb_000083_020 Hb_004525_010 Hb_004525_010 Hb_004837_230--Hb_004525_010 Hb_007101_120 Hb_007101_120 Hb_004837_230--Hb_007101_120 Hb_004837_230--Hb_000482_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0990991 3.35108 0.525878 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0158191 5.5649

CAGE analysis