Hb_000589_340

Information

Type -
Description -
Location Contig589: 310790-313487
Sequence    

Annotation

kegg
ID pop:POPTR_0010s20810g
description POPTRDRAFT_227384; hypothetical protein
nr
ID ABK96359.1
description unknown [Populus trichocarpa x Populus deltoides]
swissprot
ID Q7X9A0
description Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=1 SV=1
trembl
ID A9PJ06
description Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1
Gene Ontology
ID GO:0005524
description ribulose bisphosphate carboxylase oxygenase chloroplastic isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50105: 310679-313465 , PASA_asmbl_50106: 310885-313465
cDNA
(Sanger)
(ID:Location)		 002_I02.ab1: 311745-313468 , 010_D12.ab1: 311843-313465 , 011_D24.ab1: 311716-313465 , 024_P10.ab1: 312259-313420 , 026_L05.ab1: 311834-313465 , 039_A07.ab1: 311852-313465

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000589_340 0.0 - - unknown [Populus trichocarpa x Populus deltoides]
2 Hb_000139_310 0.0361078419 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Jatropha curcas]
3 Hb_001416_130 0.0376090158 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000450_050 0.0440520975 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
5 Hb_006570_030 0.0535613686 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
6 Hb_005276_080 0.0618022899 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Jatropha curcas]
7 Hb_002785_040 0.0624228982 - - sedoheptulose-1,7-bisphosphatase, chloroplast, putative [Ricinus communis]
8 Hb_001028_040 0.0632425377 - - hypothetical protein POPTR_0018s09860g [Populus trichocarpa]
9 Hb_001292_030 0.0635332232 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
10 Hb_000531_100 0.0636219389 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]
11 Hb_000320_370 0.0646822413 - - PREDICTED: ATP synthase gamma chain, chloroplastic [Jatropha curcas]
12 Hb_117807_020 0.0654943883 - - methyltransferase, putative [Ricinus communis]
13 Hb_000230_420 0.0658257666 - - GS [Hevea brasiliensis subsp. brasiliensis]
14 Hb_001621_090 0.0665654738 - - hypothetical protein POPTR_0010s20810g [Populus trichocarpa]
15 Hb_001892_080 0.0688133207 - - Clavata3/esr-related 16, putative [Theobroma cacao]
16 Hb_001322_120 0.0703440981 - - nutrient reservoir, putative [Ricinus communis]
17 Hb_000545_180 0.0704529984 - - Photosystem II stability/assembly factor HCF136, chloroplast precursor, putative [Ricinus communis]
18 Hb_005000_120 0.0709345799 transcription factor TF Family: C2C2-GATA hypothetical protein RCOM_1046780 [Ricinus communis]
19 Hb_008748_050 0.0710611219 - - PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Populus euphratica]
20 Hb_002368_060 0.0734604646 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000589_340 Hb_000589_340 Hb_000139_310 Hb_000139_310 Hb_000589_340--Hb_000139_310 Hb_001416_130 Hb_001416_130 Hb_000589_340--Hb_001416_130 Hb_000450_050 Hb_000450_050 Hb_000589_340--Hb_000450_050 Hb_006570_030 Hb_006570_030 Hb_000589_340--Hb_006570_030 Hb_005276_080 Hb_005276_080 Hb_000589_340--Hb_005276_080 Hb_002785_040 Hb_002785_040 Hb_000589_340--Hb_002785_040 Hb_000139_310--Hb_001416_130 Hb_000139_310--Hb_006570_030 Hb_001028_040 Hb_001028_040 Hb_000139_310--Hb_001028_040 Hb_002368_060 Hb_002368_060 Hb_000139_310--Hb_002368_060 Hb_001292_030 Hb_001292_030 Hb_000139_310--Hb_001292_030 Hb_001416_130--Hb_006570_030 Hb_029079_010 Hb_029079_010 Hb_001416_130--Hb_029079_010 Hb_001892_080 Hb_001892_080 Hb_001416_130--Hb_001892_080 Hb_000545_180 Hb_000545_180 Hb_001416_130--Hb_000545_180 Hb_001621_090 Hb_001621_090 Hb_000450_050--Hb_001621_090 Hb_005000_120 Hb_005000_120 Hb_000450_050--Hb_005000_120 Hb_000450_050--Hb_005276_080 Hb_006665_020 Hb_006665_020 Hb_000450_050--Hb_006665_020 Hb_008748_050 Hb_008748_050 Hb_000450_050--Hb_008748_050 Hb_006570_030--Hb_002368_060 Hb_006570_030--Hb_001028_040 Hb_001322_120 Hb_001322_120 Hb_006570_030--Hb_001322_120 Hb_006570_030--Hb_001292_030 Hb_001006_160 Hb_001006_160 Hb_005276_080--Hb_001006_160 Hb_005276_080--Hb_006665_020 Hb_000531_100 Hb_000531_100 Hb_005276_080--Hb_000531_100 Hb_000676_320 Hb_000676_320 Hb_005276_080--Hb_000676_320 Hb_003747_090 Hb_003747_090 Hb_002785_040--Hb_003747_090 Hb_005375_090 Hb_005375_090 Hb_002785_040--Hb_005375_090 Hb_013405_110 Hb_013405_110 Hb_002785_040--Hb_013405_110 Hb_086022_020 Hb_086022_020 Hb_002785_040--Hb_086022_020 Hb_004129_170 Hb_004129_170 Hb_002785_040--Hb_004129_170 Hb_000320_370 Hb_000320_370 Hb_002785_040--Hb_000320_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0164495 105.653 1353.23 408.461 0 0.235865
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.813827 0.426846 0 3.75627 2588.12

CAGE analysis