Hb_001433_080

Information

Type -
Description -
Location Contig1433: 80662-86812
Sequence    

Annotation

kegg
ID rcu:RCOM_1433930
description Pectinesterase precursor, putative (EC:3.1.1.11)
nr
ID XP_002512459.1
description Pectinesterase precursor, putative [Ricinus communis]
swissprot
ID Q8GX86
description Probable pectinesterase/pectinesterase inhibitor 21 OS=Arabidopsis thaliana GN=PME21 PE=2 SV=2
trembl
ID B9RFE0
description Pectinesterase OS=Ricinus communis GN=RCOM_1433930 PE=3 SV=1
Gene Ontology
ID GO:0005618
description pectinesterase pectinesterase inhibitor 28

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11399: 85997-86160
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001433_080 0.0 - - Pectinesterase precursor, putative [Ricinus communis]
2 Hb_140249_020 0.0316913728 transcription factor TF Family: MIKC PREDICTED: MADS-box protein CMB1-like [Jatropha curcas]
3 Hb_000047_100 0.0435760338 transcription factor TF Family: GRF conserved hypothetical protein [Ricinus communis]
4 Hb_006901_010 0.0709127524 - - hypothetical protein JCGZ_20722 [Jatropha curcas]
5 Hb_000083_020 0.0736634541 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
6 Hb_002014_140 0.0737256282 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
7 Hb_002893_200 0.0782470395 - - aldehyde dehydrogenase, putative [Ricinus communis]
8 Hb_000482_170 0.0806618443 transcription factor TF Family: C2C2-GATA GATA nirate-inducible carbon-metabolism involved protein [Populus nigra x Populus x canadensis]
9 Hb_004525_010 0.0837117758 - - late embryogenesis abundant, putative [Ricinus communis]
10 Hb_005605_010 0.0850725051 - - hypothetical protein POPTR_0019s13220g [Populus trichocarpa]
11 Hb_000815_110 0.085787911 - - RecName: Full=Casparian strip membrane protein 4; Short=RcCASP4 [Ricinus communis]
12 Hb_001279_380 0.0863131954 - - PREDICTED: uncharacterized protein LOC105115824 isoform X1 [Populus euphratica]
13 Hb_008566_060 0.0866841658 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004837_230 0.0869885671 - - unknown [Populus trichocarpa]
15 Hb_000640_090 0.0900900282 - - PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]
16 Hb_000334_290 0.0918473523 - - monovalent cation:proton antiporter, putative [Ricinus communis]
17 Hb_006665_020 0.0928008041 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
18 Hb_185830_050 0.0933320301 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 [Jatropha curcas]
19 Hb_000139_010 0.094026298 - - -
20 Hb_001823_010 0.0940522531 - - PREDICTED: ribosome-inactivating protein cucurmosin-like [Jatropha curcas]

Gene co-expression network

sample Hb_001433_080 Hb_001433_080 Hb_140249_020 Hb_140249_020 Hb_001433_080--Hb_140249_020 Hb_000047_100 Hb_000047_100 Hb_001433_080--Hb_000047_100 Hb_006901_010 Hb_006901_010 Hb_001433_080--Hb_006901_010 Hb_000083_020 Hb_000083_020 Hb_001433_080--Hb_000083_020 Hb_002014_140 Hb_002014_140 Hb_001433_080--Hb_002014_140 Hb_002893_200 Hb_002893_200 Hb_001433_080--Hb_002893_200 Hb_140249_020--Hb_000047_100 Hb_002162_020 Hb_002162_020 Hb_140249_020--Hb_002162_020 Hb_000815_110 Hb_000815_110 Hb_140249_020--Hb_000815_110 Hb_000002_140 Hb_000002_140 Hb_140249_020--Hb_000002_140 Hb_000007_270 Hb_000007_270 Hb_140249_020--Hb_000007_270 Hb_006665_020 Hb_006665_020 Hb_000047_100--Hb_006665_020 Hb_000047_100--Hb_000007_270 Hb_001856_240 Hb_001856_240 Hb_000047_100--Hb_001856_240 Hb_001006_160 Hb_001006_160 Hb_000047_100--Hb_001006_160 Hb_006901_010--Hb_002014_140 Hb_000482_170 Hb_000482_170 Hb_006901_010--Hb_000482_170 Hb_006901_010--Hb_000083_020 Hb_006901_010--Hb_002893_200 Hb_005605_010 Hb_005605_010 Hb_006901_010--Hb_005605_010 Hb_000334_290 Hb_000334_290 Hb_006901_010--Hb_000334_290 Hb_000083_020--Hb_005605_010 Hb_001823_010 Hb_001823_010 Hb_000083_020--Hb_001823_010 Hb_000083_020--Hb_000482_170 Hb_005245_110 Hb_005245_110 Hb_000083_020--Hb_005245_110 Hb_000083_020--Hb_002014_140 Hb_002014_140--Hb_002893_200 Hb_001279_380 Hb_001279_380 Hb_002014_140--Hb_001279_380 Hb_002014_140--Hb_000334_290 Hb_000139_010 Hb_000139_010 Hb_002014_140--Hb_000139_010 Hb_002014_140--Hb_000482_170 Hb_002893_200--Hb_001279_380 Hb_008566_060 Hb_008566_060 Hb_002893_200--Hb_008566_060 Hb_000640_090 Hb_000640_090 Hb_002893_200--Hb_000640_090 Hb_107748_010 Hb_107748_010 Hb_002893_200--Hb_107748_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.281835 0.0336967 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00817615 0.506912

CAGE analysis