Hb_002041_020

Information

Type -
Description -
Location Contig2041: 26655-30819
Sequence    

Annotation

kegg
ID rcu:RCOM_0812190
description serine-threonine protein kinase, plant-type, putative
nr
ID XP_012067737.1
description PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
swissprot
ID Q8W3M4
description Uncharacterized protein At4g06744 OS=Arabidopsis thaliana GN=At4g06744 PE=2 SV=1
trembl
ID A0A067LQA5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22116 PE=4 SV=1
Gene Ontology
ID GO:0016301
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20927: 29409-30940
cDNA
(Sanger)
(ID:Location)		 005_E02.ab1: 29409-30231 , 018_M03.ab1: 29412-30239 , 040_P08.ab1: 29409-30199

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002041_020 0.0 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
2 Hb_001832_180 0.087246464 transcription factor TF Family: C2C2-GATA hypothetical protein RCOM_1046780 [Ricinus communis]
3 Hb_000037_090 0.0885075958 - - Na(+)/H(+) antiporter, putative [Ricinus communis]
4 Hb_080791_010 0.0928669899 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
5 Hb_000326_110 0.0931757633 - - PREDICTED: uncharacterized protein LOC105632350 [Jatropha curcas]
6 Hb_000282_100 0.098127417 - - PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]
7 Hb_000026_060 0.099721566 - - beta-1,3-glucanase [Manihot esculenta]
8 Hb_000815_110 0.1011521633 - - RecName: Full=Casparian strip membrane protein 4; Short=RcCASP4 [Ricinus communis]
9 Hb_000270_040 0.1028596205 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000858_050 0.1051233553 - - kinase, putative [Ricinus communis]
11 Hb_000010_380 0.1060738875 - - hypothetical protein CICLE_v10020897mg [Citrus clementina]
12 Hb_032631_060 0.1066481436 - - Myosin heavy chain, putative [Ricinus communis]
13 Hb_009663_030 0.1070898347 - - Blue copper protein precursor, putative [Ricinus communis]
14 Hb_003436_040 0.1076467966 - - monovalent cation:proton antiporter, putative [Ricinus communis]
15 Hb_000841_040 0.1115474424 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]
16 Hb_004611_010 0.1118398053 - - Blue copper protein precursor, putative [Ricinus communis]
17 Hb_008725_280 0.1136727036 transcription factor TF Family: MYB hypothetical protein POPTR_0002s19920g [Populus trichocarpa]
18 Hb_000692_200 0.1141775057 - - PREDICTED: thioredoxin-like protein CDSP32, chloroplastic [Jatropha curcas]
19 Hb_001038_020 0.1142102943 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
20 Hb_002161_010 0.114362763 - - PREDICTED: 3,9-dihydroxypterocarpan 6A-monooxygenase-like [Jatropha curcas]

Gene co-expression network

sample Hb_002041_020 Hb_002041_020 Hb_001832_180 Hb_001832_180 Hb_002041_020--Hb_001832_180 Hb_000037_090 Hb_000037_090 Hb_002041_020--Hb_000037_090 Hb_080791_010 Hb_080791_010 Hb_002041_020--Hb_080791_010 Hb_000326_110 Hb_000326_110 Hb_002041_020--Hb_000326_110 Hb_000282_100 Hb_000282_100 Hb_002041_020--Hb_000282_100 Hb_000026_060 Hb_000026_060 Hb_002041_020--Hb_000026_060 Hb_000841_040 Hb_000841_040 Hb_001832_180--Hb_000841_040 Hb_003090_050 Hb_003090_050 Hb_001832_180--Hb_003090_050 Hb_000010_380 Hb_000010_380 Hb_001832_180--Hb_000010_380 Hb_001135_170 Hb_001135_170 Hb_001832_180--Hb_001135_170 Hb_001287_070 Hb_001287_070 Hb_001832_180--Hb_001287_070 Hb_001832_180--Hb_000282_100 Hb_019064_010 Hb_019064_010 Hb_000037_090--Hb_019064_010 Hb_009663_030 Hb_009663_030 Hb_000037_090--Hb_009663_030 Hb_003436_040 Hb_003436_040 Hb_000037_090--Hb_003436_040 Hb_000037_090--Hb_000326_110 Hb_003337_080 Hb_003337_080 Hb_000037_090--Hb_003337_080 Hb_000037_090--Hb_000010_380 Hb_080791_010--Hb_000026_060 Hb_015817_010 Hb_015817_010 Hb_080791_010--Hb_015817_010 Hb_006147_020 Hb_006147_020 Hb_080791_010--Hb_006147_020 Hb_043935_010 Hb_043935_010 Hb_080791_010--Hb_043935_010 Hb_000858_050 Hb_000858_050 Hb_080791_010--Hb_000858_050 Hb_011628_050 Hb_011628_050 Hb_000326_110--Hb_011628_050 Hb_000134_240 Hb_000134_240 Hb_000326_110--Hb_000134_240 Hb_001038_040 Hb_001038_040 Hb_000326_110--Hb_001038_040 Hb_000326_110--Hb_003436_040 Hb_000692_200 Hb_000692_200 Hb_000326_110--Hb_000692_200 Hb_001289_050 Hb_001289_050 Hb_000282_100--Hb_001289_050 Hb_009093_020 Hb_009093_020 Hb_000282_100--Hb_009093_020 Hb_000029_390 Hb_000029_390 Hb_000282_100--Hb_000029_390 Hb_000282_100--Hb_000841_040 Hb_004631_020 Hb_004631_020 Hb_000282_100--Hb_004631_020 Hb_004146_030 Hb_004146_030 Hb_000026_060--Hb_004146_030 Hb_000026_060--Hb_000858_050 Hb_003171_040 Hb_003171_040 Hb_000026_060--Hb_003171_040 Hb_000026_060--Hb_015817_010 Hb_007426_070 Hb_007426_070 Hb_000026_060--Hb_007426_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.110853 0.649858 48.7084 6.86081 0.0345898 0.0264596
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0940979 4.81897 174.703

CAGE analysis