Hb_107647_010

Information

Type -
Description -
Location Contig107647: 12622-19026
Sequence    

Annotation

kegg
ID pop:POPTR_0009s14500g
description hypothetical protein
nr
ID XP_012087675.1
description PREDICTED: uncharacterized protein ycf39 [Jatropha curcas]
swissprot
ID P48279
description Uncharacterized protein ycf39 OS=Cyanophora paradoxa GN=ycf39 PE=3 SV=1
trembl
ID A0A067JXM0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25331 PE=4 SV=1
Gene Ontology
ID GO:0009534
description vestitone reductase-related family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02334: 12658-17489
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_107647_010 0.0 - - PREDICTED: uncharacterized protein ycf39 [Jatropha curcas]
2 Hb_002609_140 0.088264581 - - PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_010407_090 0.0942405935 - - PREDICTED: aldo-keto reductase isoform X1 [Jatropha curcas]
4 Hb_002249_090 0.1032290004 - - PREDICTED: magnesium protoporphyrin IX methyltransferase, chloroplastic [Jatropha curcas]
5 Hb_005977_040 0.1146329871 - - Photosystem I reaction center subunit IV A [Medicago truncatula]
6 Hb_107373_010 0.1191742806 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
7 Hb_117807_020 0.1312953034 - - methyltransferase, putative [Ricinus communis]
8 Hb_011344_030 0.1324081494 - - PREDICTED: elongation factor G-2, chloroplastic [Jatropha curcas]
9 Hb_000049_330 0.1332508036 - - PREDICTED: phospholipase A1-IIdelta [Jatropha curcas]
10 Hb_005523_040 0.13359013 - - PREDICTED: uncharacterized protein LOC100253680 [Vitis vinifera]
11 Hb_003106_160 0.13487762 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520 [Jatropha curcas]
12 Hb_001277_430 0.136701105 - - PREDICTED: protein IQ-DOMAIN 14 [Jatropha curcas]
13 Hb_000544_070 0.1373098748 - - Peptidyl-prolyl cis-trans isomerase FKBP17-2 [Morus notabilis]
14 Hb_000174_080 0.1376667921 - - 4-nitrophenylphosphatase, putative [Ricinus communis]
15 Hb_001584_210 0.1382714461 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Jatropha curcas]
16 Hb_002485_050 0.1399724757 - - PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic [Jatropha curcas]
17 Hb_001257_110 0.1406100186 - - PREDICTED: uncharacterized protein LOC105636396 [Jatropha curcas]
18 Hb_003905_030 0.1409605156 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
19 Hb_000039_210 0.1422828787 - - PREDICTED: uncharacterized protein LOC105649449 [Jatropha curcas]
20 Hb_001584_050 0.1423012198 - - PREDICTED: NHL repeat-containing protein 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_107647_010 Hb_107647_010 Hb_002609_140 Hb_002609_140 Hb_107647_010--Hb_002609_140 Hb_010407_090 Hb_010407_090 Hb_107647_010--Hb_010407_090 Hb_002249_090 Hb_002249_090 Hb_107647_010--Hb_002249_090 Hb_005977_040 Hb_005977_040 Hb_107647_010--Hb_005977_040 Hb_107373_010 Hb_107373_010 Hb_107647_010--Hb_107373_010 Hb_117807_020 Hb_117807_020 Hb_107647_010--Hb_117807_020 Hb_002609_140--Hb_005977_040 Hb_000544_070 Hb_000544_070 Hb_002609_140--Hb_000544_070 Hb_002609_140--Hb_002249_090 Hb_004306_090 Hb_004306_090 Hb_002609_140--Hb_004306_090 Hb_002609_140--Hb_117807_020 Hb_010407_090--Hb_002249_090 Hb_010407_090--Hb_002609_140 Hb_002006_050 Hb_002006_050 Hb_010407_090--Hb_002006_050 Hb_000174_080 Hb_000174_080 Hb_010407_090--Hb_000174_080 Hb_000261_470 Hb_000261_470 Hb_010407_090--Hb_000261_470 Hb_003602_100 Hb_003602_100 Hb_002249_090--Hb_003602_100 Hb_002249_090--Hb_000174_080 Hb_002249_090--Hb_000544_070 Hb_000648_070 Hb_000648_070 Hb_002249_090--Hb_000648_070 Hb_074548_010 Hb_074548_010 Hb_005977_040--Hb_074548_010 Hb_005977_040--Hb_000544_070 Hb_000161_010 Hb_000161_010 Hb_005977_040--Hb_000161_010 Hb_005523_040 Hb_005523_040 Hb_005977_040--Hb_005523_040 Hb_001257_110 Hb_001257_110 Hb_005977_040--Hb_001257_110 Hb_001338_130 Hb_001338_130 Hb_107373_010--Hb_001338_130 Hb_025325_010 Hb_025325_010 Hb_107373_010--Hb_025325_010 Hb_107373_010--Hb_002609_140 Hb_005649_060 Hb_005649_060 Hb_107373_010--Hb_005649_060 Hb_000115_020 Hb_000115_020 Hb_107373_010--Hb_000115_020 Hb_000307_150 Hb_000307_150 Hb_107373_010--Hb_000307_150 Hb_000083_180 Hb_000083_180 Hb_117807_020--Hb_000083_180 Hb_005276_080 Hb_005276_080 Hb_117807_020--Hb_005276_080 Hb_001766_160 Hb_001766_160 Hb_117807_020--Hb_001766_160 Hb_000450_050 Hb_000450_050 Hb_117807_020--Hb_000450_050 Hb_000589_340 Hb_000589_340 Hb_117807_020--Hb_000589_340 Hb_000230_420 Hb_000230_420 Hb_117807_020--Hb_000230_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.895998 5.16753 52.0046 8.05156 1.71203 1.17628
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.43377 1.87989 0.0503002 1.06243 104.484

CAGE analysis