Hb_000261_470

Information

Type transcription factor
Description TF Family: bHLH
Location Contig261: 453505-455344
Sequence    

Annotation

kegg
ID pop:POPTR_0001s32160g
description POPTRDRAFT_174909; hypothetical protein
nr
ID XP_011045659.1
description PREDICTED: transcription factor FAMA isoform X2 [Populus euphratica]
swissprot
ID Q56YJ8
description Transcription factor FAMA OS=Arabidopsis thaliana GN=FAMA PE=1 SV=1
trembl
ID B9GFX7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s32160g PE=4 SV=2
Gene Ontology
ID GO:0003677
description transcription factor fama isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27319: 454246-454783
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000261_470 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor FAMA isoform X2 [Populus euphratica]
2 Hb_011537_140 0.0620095983 - - hypothetical protein POPTR_0001s05320g [Populus trichocarpa]
3 Hb_000367_230 0.1182675076 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
4 Hb_020805_050 0.1227744832 - - PREDICTED: MLO-like protein 9 [Jatropha curcas]
5 Hb_007101_120 0.1253158028 - - PREDICTED: uncharacterized protein LOC105649846 [Jatropha curcas]
6 Hb_004837_230 0.1290054327 - - unknown [Populus trichocarpa]
7 Hb_001287_020 0.1352410076 - - SulA [Manihot esculenta]
8 Hb_003921_010 0.1374206033 - - conserved hypothetical protein [Ricinus communis]
9 Hb_010407_090 0.1379753931 - - PREDICTED: aldo-keto reductase isoform X1 [Jatropha curcas]
10 Hb_000003_490 0.1382730365 - - PREDICTED: uncharacterized protein LOC105631559 isoform X2 [Jatropha curcas]
11 Hb_000915_250 0.1395153137 - - chloroplast latex aldolase-like protein [Manihot esculenta]
12 Hb_000191_090 0.142382785 transcription factor TF Family: MYB GHMYB10, putative [Theobroma cacao]
13 Hb_005245_110 0.1437445442 - - hypothetical protein CISIN_1g0225141mg [Citrus sinensis]
14 Hb_006555_020 0.1437556686 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]
15 Hb_002762_020 0.1449232839 - - hypothetical protein VITISV_043202 [Vitis vinifera]
16 Hb_005618_030 0.1449982735 - - PREDICTED: cytochrome P450 734A1-like [Jatropha curcas]
17 Hb_008484_080 0.1452264056 - - PREDICTED: crocetin glucosyltransferase, chloroplastic-like [Jatropha curcas]
18 Hb_004724_440 0.1469484451 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001377_080 0.1474143012 - - PREDICTED: uncharacterized protein LOC105642864 [Jatropha curcas]
20 Hb_000165_170 0.1509938882 transcription factor TF Family: G2-like hypothetical protein POPTR_0010s19310g [Populus trichocarpa]

Gene co-expression network

sample Hb_000261_470 Hb_000261_470 Hb_011537_140 Hb_011537_140 Hb_000261_470--Hb_011537_140 Hb_000367_230 Hb_000367_230 Hb_000261_470--Hb_000367_230 Hb_020805_050 Hb_020805_050 Hb_000261_470--Hb_020805_050 Hb_007101_120 Hb_007101_120 Hb_000261_470--Hb_007101_120 Hb_004837_230 Hb_004837_230 Hb_000261_470--Hb_004837_230 Hb_001287_020 Hb_001287_020 Hb_000261_470--Hb_001287_020 Hb_011537_140--Hb_007101_120 Hb_000003_490 Hb_000003_490 Hb_011537_140--Hb_000003_490 Hb_011537_140--Hb_004837_230 Hb_000191_090 Hb_000191_090 Hb_011537_140--Hb_000191_090 Hb_011537_140--Hb_020805_050 Hb_000367_230--Hb_011537_140 Hb_180985_010 Hb_180985_010 Hb_000367_230--Hb_180985_010 Hb_000393_040 Hb_000393_040 Hb_000367_230--Hb_000393_040 Hb_002307_190 Hb_002307_190 Hb_000367_230--Hb_002307_190 Hb_000648_070 Hb_000648_070 Hb_000367_230--Hb_000648_070 Hb_020805_050--Hb_007101_120 Hb_020805_050--Hb_004837_230 Hb_008484_080 Hb_008484_080 Hb_020805_050--Hb_008484_080 Hb_000625_080 Hb_000625_080 Hb_020805_050--Hb_000625_080 Hb_006665_020 Hb_006665_020 Hb_020805_050--Hb_006665_020 Hb_020805_050--Hb_000191_090 Hb_007101_120--Hb_004837_230 Hb_007101_120--Hb_000191_090 Hb_005245_110 Hb_005245_110 Hb_007101_120--Hb_005245_110 Hb_007101_120--Hb_008484_080 Hb_005618_030 Hb_005618_030 Hb_007101_120--Hb_005618_030 Hb_005605_010 Hb_005605_010 Hb_004837_230--Hb_005605_010 Hb_004837_230--Hb_005245_110 Hb_000083_020 Hb_000083_020 Hb_004837_230--Hb_000083_020 Hb_004525_010 Hb_004525_010 Hb_004837_230--Hb_004525_010 Hb_000482_170 Hb_000482_170 Hb_004837_230--Hb_000482_170 Hb_003683_170 Hb_003683_170 Hb_001287_020--Hb_003683_170 Hb_000030_070 Hb_000030_070 Hb_001287_020--Hb_000030_070 Hb_001287_020--Hb_005618_030 Hb_000080_070 Hb_000080_070 Hb_001287_020--Hb_000080_070 Hb_001377_080 Hb_001377_080 Hb_001287_020--Hb_001377_080 Hb_000510_180 Hb_000510_180 Hb_001287_020--Hb_000510_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0748154 0.0708215 8.93539 0.456018 0.0158359 0.0439474
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.108127 0.17012 0.211993 0.0453536 9.61478

CAGE analysis