Hb_000648_070

Information

Type -
Description -
Location Contig648: 103599-106124
Sequence    

Annotation

kegg
ID rcu:RCOM_0733140
description hypothetical protein
nr
ID XP_011032243.1
description PREDICTED: protein TIC 62, chloroplastic [Populus euphratica]
swissprot
ID Q8SKU2
description Protein TIC 62, chloroplastic OS=Pisum sativum GN=TIC62 PE=1 SV=2
trembl
ID B9S3E7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0733140 PE=4 SV=1
Gene Ontology
ID GO:0009508
description protein tic chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52422: 103532-106012 , PASA_asmbl_52423: 103532-106012
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000648_070 0.0 - - PREDICTED: protein TIC 62, chloroplastic [Populus euphratica]
2 Hb_001287_020 0.08534614 - - SulA [Manihot esculenta]
3 Hb_002249_090 0.0959121544 - - PREDICTED: magnesium protoporphyrin IX methyltransferase, chloroplastic [Jatropha curcas]
4 Hb_000510_180 0.0963591076 - - unknown [Lotus japonicus]
5 Hb_002215_030 0.1027697315 - - PREDICTED: uncharacterized protein LOC105640840 isoform X1 [Jatropha curcas]
6 Hb_028227_060 0.1037190407 - - PREDICTED: non-specific lipid transfer protein GPI-anchored 1-like [Populus euphratica]
7 Hb_002007_120 0.1050696374 - - PREDICTED: psbP domain-containing protein 7, chloroplastic [Jatropha curcas]
8 Hb_004884_100 0.1058179287 - - PREDICTED: lectin-domain containing receptor kinase VI.4-like [Jatropha curcas]
9 Hb_000881_070 0.1062957082 - - nucleic acid binding protein, putative [Ricinus communis]
10 Hb_005015_100 0.1071367502 - - PREDICTED: uncharacterized protein LOC105636541 isoform X1 [Jatropha curcas]
11 Hb_001343_030 0.1075695472 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Jatropha curcas]
12 Hb_006198_030 0.1113023208 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004306_090 0.1126056931 - - PREDICTED: uncharacterized protein LOC105644392 isoform X2 [Jatropha curcas]
14 Hb_001006_150 0.1140609854 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
15 Hb_000393_040 0.114250926 - - PREDICTED: uncharacterized protein LOC105128208 [Populus euphratica]
16 Hb_001338_120 0.1144617129 - - hypothetical chloroplast RF68 (chloroplast) [Ipomoea batatas]
17 Hb_005000_110 0.1146974407 - - PREDICTED: uncharacterized protein LOC105637872 isoform X1 [Jatropha curcas]
18 Hb_003921_020 0.1148382987 - - hypothetical protein JCGZ_10628 [Jatropha curcas]
19 Hb_180985_010 0.1151372702 - - NDH-dependent cyclic electron flow 1 isoform 1 [Theobroma cacao]
20 Hb_004712_220 0.115367665 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000648_070 Hb_000648_070 Hb_001287_020 Hb_001287_020 Hb_000648_070--Hb_001287_020 Hb_002249_090 Hb_002249_090 Hb_000648_070--Hb_002249_090 Hb_000510_180 Hb_000510_180 Hb_000648_070--Hb_000510_180 Hb_002215_030 Hb_002215_030 Hb_000648_070--Hb_002215_030 Hb_028227_060 Hb_028227_060 Hb_000648_070--Hb_028227_060 Hb_002007_120 Hb_002007_120 Hb_000648_070--Hb_002007_120 Hb_003683_170 Hb_003683_170 Hb_001287_020--Hb_003683_170 Hb_000030_070 Hb_000030_070 Hb_001287_020--Hb_000030_070 Hb_005618_030 Hb_005618_030 Hb_001287_020--Hb_005618_030 Hb_000080_070 Hb_000080_070 Hb_001287_020--Hb_000080_070 Hb_001377_080 Hb_001377_080 Hb_001287_020--Hb_001377_080 Hb_001287_020--Hb_000510_180 Hb_003602_100 Hb_003602_100 Hb_002249_090--Hb_003602_100 Hb_000174_080 Hb_000174_080 Hb_002249_090--Hb_000174_080 Hb_002609_140 Hb_002609_140 Hb_002249_090--Hb_002609_140 Hb_000544_070 Hb_000544_070 Hb_002249_090--Hb_000544_070 Hb_107647_010 Hb_107647_010 Hb_002249_090--Hb_107647_010 Hb_000625_080 Hb_000625_080 Hb_000510_180--Hb_000625_080 Hb_013726_060 Hb_013726_060 Hb_000510_180--Hb_013726_060 Hb_002818_110 Hb_002818_110 Hb_000510_180--Hb_002818_110 Hb_008013_020 Hb_008013_020 Hb_000510_180--Hb_008013_020 Hb_006573_110 Hb_006573_110 Hb_000510_180--Hb_006573_110 Hb_009193_020 Hb_009193_020 Hb_000510_180--Hb_009193_020 Hb_005015_100 Hb_005015_100 Hb_002215_030--Hb_005015_100 Hb_002215_030--Hb_001287_020 Hb_020648_030 Hb_020648_030 Hb_002215_030--Hb_020648_030 Hb_002215_030--Hb_008013_020 Hb_000977_250 Hb_000977_250 Hb_002215_030--Hb_000977_250 Hb_002215_030--Hb_005618_030 Hb_000974_040 Hb_000974_040 Hb_028227_060--Hb_000974_040 Hb_028227_060--Hb_002007_120 Hb_004884_100 Hb_004884_100 Hb_028227_060--Hb_004884_100 Hb_000268_060 Hb_000268_060 Hb_028227_060--Hb_000268_060 Hb_137216_010 Hb_137216_010 Hb_028227_060--Hb_137216_010 Hb_110266_010 Hb_110266_010 Hb_002007_120--Hb_110266_010 Hb_000313_250 Hb_000313_250 Hb_002007_120--Hb_000313_250 Hb_048141_050 Hb_048141_050 Hb_002007_120--Hb_048141_050 Hb_092516_010 Hb_092516_010 Hb_002007_120--Hb_092516_010 Hb_000530_040 Hb_000530_040 Hb_002007_120--Hb_000530_040 Hb_000962_090 Hb_000962_090 Hb_002007_120--Hb_000962_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.63458 4.42116 108.833 21.7718 0.802112 0.426389
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.89683 1.47196 0.463514 0.325764 107.28

CAGE analysis