Hb_004884_100

Information

Type -
Description -
Location Contig4884: 83991-86024
Sequence    

Annotation

kegg
ID rcu:RCOM_0847450
description kinase, putative (EC:2.7.11.22)
nr
ID XP_012089836.1
description PREDICTED: lectin-domain containing receptor kinase VI.4-like [Jatropha curcas]
swissprot
ID Q9M020
description Lectin-domain containing receptor kinase VI.3 OS=Arabidopsis thaliana GN=LECRK63 PE=2 SV=1
trembl
ID A0A067JG80
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00434 PE=3 SV=1
Gene Ontology
ID GO:0004693
description lectin-domain containing receptor kinase -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45145: 85443-85775
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004884_100 0.0 - - PREDICTED: lectin-domain containing receptor kinase VI.4-like [Jatropha curcas]
2 Hb_004994_280 0.091991096 - - hypothetical protein JCGZ_14421 [Jatropha curcas]
3 Hb_002007_120 0.1002648671 - - PREDICTED: psbP domain-containing protein 7, chloroplastic [Jatropha curcas]
4 Hb_028227_060 0.1049793403 - - PREDICTED: non-specific lipid transfer protein GPI-anchored 1-like [Populus euphratica]
5 Hb_000648_070 0.1058179287 - - PREDICTED: protein TIC 62, chloroplastic [Populus euphratica]
6 Hb_000530_040 0.1136491768 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG2 isoform X1 [Jatropha curcas]
7 Hb_003573_030 0.116001355 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
8 Hb_000061_010 0.1176304029 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000069_220 0.118397883 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF023 [Jatropha curcas]
10 Hb_001675_090 0.1197663898 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
11 Hb_000210_030 0.1207429559 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP6 [Jatropha curcas]
12 Hb_000697_030 0.1211399236 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Pyrus x bretschneideri]
13 Hb_001343_030 0.1212914651 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Jatropha curcas]
14 Hb_000281_120 0.1219014294 - - protein binding protein, putative [Ricinus communis]
15 Hb_002818_110 0.1221403621 transcription factor TF Family: bHLH hypothetical protein RCOM_1343120 [Ricinus communis]
16 Hb_000262_090 0.123059219 - - Root phototropism protein, putative [Ricinus communis]
17 Hb_003921_020 0.1258300335 - - hypothetical protein JCGZ_10628 [Jatropha curcas]
18 Hb_001975_120 0.1263277803 - - chlorophyll a/b binding protein type II [Glycine max]
19 Hb_009476_030 0.1265259827 - - fatty acid desaturase [Manihot esculenta]
20 Hb_003651_030 0.126702471 - - lyase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004884_100 Hb_004884_100 Hb_004994_280 Hb_004994_280 Hb_004884_100--Hb_004994_280 Hb_002007_120 Hb_002007_120 Hb_004884_100--Hb_002007_120 Hb_028227_060 Hb_028227_060 Hb_004884_100--Hb_028227_060 Hb_000648_070 Hb_000648_070 Hb_004884_100--Hb_000648_070 Hb_000530_040 Hb_000530_040 Hb_004884_100--Hb_000530_040 Hb_003573_030 Hb_003573_030 Hb_004884_100--Hb_003573_030 Hb_078954_030 Hb_078954_030 Hb_004994_280--Hb_078954_030 Hb_004994_280--Hb_000530_040 Hb_110266_010 Hb_110266_010 Hb_004994_280--Hb_110266_010 Hb_048141_050 Hb_048141_050 Hb_004994_280--Hb_048141_050 Hb_001424_010 Hb_001424_010 Hb_004994_280--Hb_001424_010 Hb_002007_120--Hb_110266_010 Hb_000313_250 Hb_000313_250 Hb_002007_120--Hb_000313_250 Hb_002007_120--Hb_048141_050 Hb_092516_010 Hb_092516_010 Hb_002007_120--Hb_092516_010 Hb_002007_120--Hb_000530_040 Hb_000962_090 Hb_000962_090 Hb_002007_120--Hb_000962_090 Hb_000974_040 Hb_000974_040 Hb_028227_060--Hb_000974_040 Hb_028227_060--Hb_002007_120 Hb_028227_060--Hb_000648_070 Hb_000268_060 Hb_000268_060 Hb_028227_060--Hb_000268_060 Hb_137216_010 Hb_137216_010 Hb_028227_060--Hb_137216_010 Hb_001287_020 Hb_001287_020 Hb_000648_070--Hb_001287_020 Hb_002249_090 Hb_002249_090 Hb_000648_070--Hb_002249_090 Hb_000510_180 Hb_000510_180 Hb_000648_070--Hb_000510_180 Hb_002215_030 Hb_002215_030 Hb_000648_070--Hb_002215_030 Hb_000648_070--Hb_002007_120 Hb_000530_040--Hb_001424_010 Hb_000697_030 Hb_000697_030 Hb_000530_040--Hb_000697_030 Hb_000530_040--Hb_003573_030 Hb_001975_120 Hb_001975_120 Hb_000530_040--Hb_001975_120 Hb_000069_220 Hb_000069_220 Hb_000530_040--Hb_000069_220 Hb_000530_040--Hb_078954_030 Hb_000281_120 Hb_000281_120 Hb_003573_030--Hb_000281_120 Hb_003573_030--Hb_000697_030 Hb_003651_030 Hb_003651_030 Hb_003573_030--Hb_003651_030 Hb_000210_030 Hb_000210_030 Hb_003573_030--Hb_000210_030 Hb_003573_030--Hb_000069_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.03626 0.0740217 1.76299 0.478827 0 0.0187138
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0443012 0 0 0 1.43721

CAGE analysis