Hb_002215_030

Information

Type -
Description -
Location Contig2215: 30597-39116
Sequence    

Annotation

kegg
ID rcu:RCOM_1116360
description hypothetical protein
nr
ID XP_012080624.1
description PREDICTED: uncharacterized protein LOC105640840 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SH44
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1116360 PE=4 SV=1
Gene Ontology
ID GO:0009507
description lycopene beta epsilon cyclase protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22855: 31938-32367 , PASA_asmbl_22856: 32842-34712 , PASA_asmbl_22857: 35972-37955 , PASA_asmbl_22858: 38116-38957
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002215_030 0.0 - - PREDICTED: uncharacterized protein LOC105640840 isoform X1 [Jatropha curcas]
2 Hb_005015_100 0.0743908162 - - PREDICTED: uncharacterized protein LOC105636541 isoform X1 [Jatropha curcas]
3 Hb_001287_020 0.0886970355 - - SulA [Manihot esculenta]
4 Hb_020648_030 0.099938337 - - PREDICTED: long-chain-alcohol oxidase FAO1 [Jatropha curcas]
5 Hb_008013_020 0.1003897168 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
6 Hb_000977_250 0.1008301503 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
7 Hb_005618_030 0.1026021625 - - PREDICTED: cytochrome P450 734A1-like [Jatropha curcas]
8 Hb_000262_090 0.1026185704 - - Root phototropism protein, putative [Ricinus communis]
9 Hb_000648_070 0.1027697315 - - PREDICTED: protein TIC 62, chloroplastic [Populus euphratica]
10 Hb_000821_030 0.1029279218 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-2 [Jatropha curcas]
11 Hb_000080_070 0.1045180192 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic [Jatropha curcas]
12 Hb_003605_170 0.1050193088 - - hypothetical protein POPTR_0013s12020g [Populus trichocarpa]
13 Hb_006573_110 0.1055864119 - - PREDICTED: uncharacterized protein PAM68-like [Jatropha curcas]
14 Hb_000030_070 0.1059069419 - - conserved hypothetical protein [Ricinus communis]
15 Hb_020805_050 0.1059208801 - - PREDICTED: MLO-like protein 9 [Jatropha curcas]
16 Hb_000510_180 0.1059621329 - - unknown [Lotus japonicus]
17 Hb_000174_120 0.1066670577 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
18 Hb_000061_010 0.1075977991 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002818_110 0.1083274501 transcription factor TF Family: bHLH hypothetical protein RCOM_1343120 [Ricinus communis]
20 Hb_000210_020 0.1087780229 transcription factor TF Family: OFP Ovate family protein 13, putative [Theobroma cacao]

Gene co-expression network

sample Hb_002215_030 Hb_002215_030 Hb_005015_100 Hb_005015_100 Hb_002215_030--Hb_005015_100 Hb_001287_020 Hb_001287_020 Hb_002215_030--Hb_001287_020 Hb_020648_030 Hb_020648_030 Hb_002215_030--Hb_020648_030 Hb_008013_020 Hb_008013_020 Hb_002215_030--Hb_008013_020 Hb_000977_250 Hb_000977_250 Hb_002215_030--Hb_000977_250 Hb_005618_030 Hb_005618_030 Hb_002215_030--Hb_005618_030 Hb_005015_100--Hb_020648_030 Hb_005015_100--Hb_001287_020 Hb_000510_180 Hb_000510_180 Hb_005015_100--Hb_000510_180 Hb_001717_060 Hb_001717_060 Hb_005015_100--Hb_001717_060 Hb_000648_070 Hb_000648_070 Hb_005015_100--Hb_000648_070 Hb_003683_170 Hb_003683_170 Hb_001287_020--Hb_003683_170 Hb_000030_070 Hb_000030_070 Hb_001287_020--Hb_000030_070 Hb_001287_020--Hb_005618_030 Hb_000080_070 Hb_000080_070 Hb_001287_020--Hb_000080_070 Hb_001377_080 Hb_001377_080 Hb_001287_020--Hb_001377_080 Hb_001287_020--Hb_000510_180 Hb_000083_180 Hb_000083_180 Hb_020648_030--Hb_000083_180 Hb_020648_030--Hb_001717_060 Hb_003038_060 Hb_003038_060 Hb_020648_030--Hb_003038_060 Hb_005754_050 Hb_005754_050 Hb_020648_030--Hb_005754_050 Hb_000881_070 Hb_000881_070 Hb_020648_030--Hb_000881_070 Hb_000948_240 Hb_000948_240 Hb_020648_030--Hb_000948_240 Hb_006573_110 Hb_006573_110 Hb_008013_020--Hb_006573_110 Hb_003921_020 Hb_003921_020 Hb_008013_020--Hb_003921_020 Hb_000262_090 Hb_000262_090 Hb_008013_020--Hb_000262_090 Hb_000821_030 Hb_000821_030 Hb_008013_020--Hb_000821_030 Hb_002818_110 Hb_002818_110 Hb_008013_020--Hb_002818_110 Hb_000210_030 Hb_000210_030 Hb_008013_020--Hb_000210_030 Hb_002434_040 Hb_002434_040 Hb_000977_250--Hb_002434_040 Hb_000053_010 Hb_000053_010 Hb_000977_250--Hb_000053_010 Hb_023313_050 Hb_023313_050 Hb_000977_250--Hb_023313_050 Hb_001170_020 Hb_001170_020 Hb_000977_250--Hb_001170_020 Hb_003605_170 Hb_003605_170 Hb_000977_250--Hb_003605_170 Hb_014361_160 Hb_014361_160 Hb_000977_250--Hb_014361_160 Hb_005618_030--Hb_000030_070 Hb_005618_030--Hb_008013_020 Hb_005618_030--Hb_003683_170 Hb_006555_020 Hb_006555_020 Hb_005618_030--Hb_006555_020 Hb_096267_010 Hb_096267_010 Hb_005618_030--Hb_096267_010 Hb_000937_010 Hb_000937_010 Hb_005618_030--Hb_000937_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.1618 0.0727033 8.98137 1.52782 0.12973 0.0256794
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0204167 0 0 0.0319307 8.16896

CAGE analysis