Hb_020648_030

Information

Type -
Description -
Location Contig20648: 25237-30582
Sequence    

Annotation

kegg
ID pop:POPTR_0010s07980g
description POPTRDRAFT_768875; alcohol oxidase-related family protein
nr
ID XP_012069873.1
description PREDICTED: long-chain-alcohol oxidase FAO1 [Jatropha curcas]
swissprot
ID B5WWZ8
description Long-chain-alcohol oxidase FAO1 OS=Lotus japonicus GN=FAO1 PE=1 SV=1
trembl
ID A0A067KVY5
description Long-chain-alcohol oxidase OS=Jatropha curcas GN=JCGZ_02359 PE=3 SV=1
Gene Ontology
ID GO:0016020
description long-chain-alcohol oxidase fao1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21269: 25111-30581 , PASA_asmbl_21270: 29566-30586
cDNA
(Sanger)
(ID:Location)		 015_N06.ab1: 27040-30581 , 030_P09.ab1: 29896-30581

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020648_030 0.0 - - PREDICTED: long-chain-alcohol oxidase FAO1 [Jatropha curcas]
2 Hb_000083_180 0.0732712159 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
3 Hb_001717_060 0.0775916679 - - PREDICTED: xylogen-like protein 11 [Gossypium raimondii]
4 Hb_003038_060 0.0843969378 - - hypothetical protein POPTR_0007s13050g [Populus trichocarpa]
5 Hb_005754_050 0.084714096 - - PREDICTED: uncharacterized protein LOC105636679 [Jatropha curcas]
6 Hb_000881_070 0.0849291786 - - nucleic acid binding protein, putative [Ricinus communis]
7 Hb_000948_240 0.0923678332 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003020_120 0.0925996402 - - PREDICTED: protein TIC 62, chloroplastic [Populus euphratica]
9 Hb_010288_070 0.0970870517 transcription factor TF Family: MYB MYB-like DNA-binding domain protein [Theobroma cacao]
10 Hb_003050_380 0.0980173356 - - hypothetical protein POPTR_0007s03380g [Populus trichocarpa]
11 Hb_020805_050 0.0987841199 - - PREDICTED: MLO-like protein 9 [Jatropha curcas]
12 Hb_000230_420 0.0993096726 - - GS [Hevea brasiliensis subsp. brasiliensis]
13 Hb_002215_030 0.099938337 - - PREDICTED: uncharacterized protein LOC105640840 isoform X1 [Jatropha curcas]
14 Hb_003032_080 0.0999674946 - - conserved hypothetical protein [Ricinus communis]
15 Hb_010326_020 0.1004535943 - - PREDICTED: thioredoxin-like 4, chloroplastic [Jatropha curcas]
16 Hb_005015_100 0.1010355425 - - PREDICTED: uncharacterized protein LOC105636541 isoform X1 [Jatropha curcas]
17 Hb_005280_020 0.1010449494 - - glycine cleavage system h protein, putative [Ricinus communis]
18 Hb_001862_040 0.1010914407 - - heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]
19 Hb_002592_040 0.1020205529 - - ACC oxidase 3 [Hevea brasiliensis]
20 Hb_000676_320 0.1021979123 - - MADS-box transcription factor, partial [Clutia sp. DAV B80.252/F1980.8371]

Gene co-expression network

sample Hb_020648_030 Hb_020648_030 Hb_000083_180 Hb_000083_180 Hb_020648_030--Hb_000083_180 Hb_001717_060 Hb_001717_060 Hb_020648_030--Hb_001717_060 Hb_003038_060 Hb_003038_060 Hb_020648_030--Hb_003038_060 Hb_005754_050 Hb_005754_050 Hb_020648_030--Hb_005754_050 Hb_000881_070 Hb_000881_070 Hb_020648_030--Hb_000881_070 Hb_000948_240 Hb_000948_240 Hb_020648_030--Hb_000948_240 Hb_000230_420 Hb_000230_420 Hb_000083_180--Hb_000230_420 Hb_003020_120 Hb_003020_120 Hb_000083_180--Hb_003020_120 Hb_001006_160 Hb_001006_160 Hb_000083_180--Hb_001006_160 Hb_000676_320 Hb_000676_320 Hb_000083_180--Hb_000676_320 Hb_117807_020 Hb_117807_020 Hb_000083_180--Hb_117807_020 Hb_005276_080 Hb_005276_080 Hb_000083_180--Hb_005276_080 Hb_001717_060--Hb_003038_060 Hb_001717_060--Hb_005754_050 Hb_000531_100 Hb_000531_100 Hb_001717_060--Hb_000531_100 Hb_005280_020 Hb_005280_020 Hb_001717_060--Hb_005280_020 Hb_013726_060 Hb_013726_060 Hb_001717_060--Hb_013726_060 Hb_002818_110 Hb_002818_110 Hb_001717_060--Hb_002818_110 Hb_003038_060--Hb_000230_420 Hb_001862_040 Hb_001862_040 Hb_003038_060--Hb_001862_040 Hb_013405_110 Hb_013405_110 Hb_003038_060--Hb_013405_110 Hb_002785_040 Hb_002785_040 Hb_003038_060--Hb_002785_040 Hb_003038_060--Hb_000531_100 Hb_001170_020 Hb_001170_020 Hb_005754_050--Hb_001170_020 Hb_003050_380 Hb_003050_380 Hb_005754_050--Hb_003050_380 Hb_005888_020 Hb_005888_020 Hb_005754_050--Hb_005888_020 Hb_002304_030 Hb_002304_030 Hb_005754_050--Hb_002304_030 Hb_010288_070 Hb_010288_070 Hb_005754_050--Hb_010288_070 Hb_000977_250 Hb_000977_250 Hb_005754_050--Hb_000977_250 Hb_000881_070--Hb_003020_120 Hb_003120_020 Hb_003120_020 Hb_000881_070--Hb_003120_020 Hb_010326_020 Hb_010326_020 Hb_000881_070--Hb_010326_020 Hb_002375_030 Hb_002375_030 Hb_000881_070--Hb_002375_030 Hb_000881_070--Hb_001717_060 Hb_002592_040 Hb_002592_040 Hb_000948_240--Hb_002592_040 Hb_000948_240--Hb_001862_040 Hb_005375_090 Hb_005375_090 Hb_000948_240--Hb_005375_090 Hb_003747_090 Hb_003747_090 Hb_000948_240--Hb_003747_090 Hb_000334_290 Hb_000334_290 Hb_000948_240--Hb_000334_290 Hb_000948_240--Hb_013405_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.999786 0.426241 62.4819 16.0265 0.594382 0.892111
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.035662 0.0280619 0.0267435 0.0780092 87.2197

CAGE analysis