Hb_005015_100

Information

Type -
Description -
Location Contig5015: 74890-78536
Sequence    

Annotation

kegg
ID pop:POPTR_0005s08630g
description POPTRDRAFT_1077522; hypothetical protein
nr
ID XP_012075226.1
description PREDICTED: uncharacterized protein LOC105636541 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KJV1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09402 PE=4 SV=1
Gene Ontology
ID GO:0009534
description PREDICTED: uncharacterized protein LOC105636541 isoform X1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45866: 74973-78248
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005015_100 0.0 - - PREDICTED: uncharacterized protein LOC105636541 isoform X1 [Jatropha curcas]
2 Hb_002215_030 0.0743908162 - - PREDICTED: uncharacterized protein LOC105640840 isoform X1 [Jatropha curcas]
3 Hb_020648_030 0.1010355425 - - PREDICTED: long-chain-alcohol oxidase FAO1 [Jatropha curcas]
4 Hb_001287_020 0.1015236395 - - SulA [Manihot esculenta]
5 Hb_000510_180 0.1017423846 - - unknown [Lotus japonicus]
6 Hb_001717_060 0.1051110881 - - PREDICTED: xylogen-like protein 11 [Gossypium raimondii]
7 Hb_000648_070 0.1071367502 - - PREDICTED: protein TIC 62, chloroplastic [Populus euphratica]
8 Hb_013726_060 0.1092859845 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]
9 Hb_002818_110 0.1108854216 transcription factor TF Family: bHLH hypothetical protein RCOM_1343120 [Ricinus communis]
10 Hb_001338_120 0.1141163339 - - hypothetical chloroplast RF68 (chloroplast) [Ipomoea batatas]
11 Hb_001751_050 0.1150824888 - - PREDICTED: phytol kinase 1, chloroplastic [Jatropha curcas]
12 Hb_000625_080 0.1151058785 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
13 Hb_005527_070 0.1158787312 - - short-chain dehydrogenase/reductase family protein [Populus trichocarpa]
14 Hb_002249_090 0.1163422678 - - PREDICTED: magnesium protoporphyrin IX methyltransferase, chloroplastic [Jatropha curcas]
15 Hb_008013_020 0.1165047269 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
16 Hb_020805_050 0.1171959571 - - PREDICTED: MLO-like protein 9 [Jatropha curcas]
17 Hb_101133_030 0.1180311441 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
18 Hb_000881_070 0.118211041 - - nucleic acid binding protein, putative [Ricinus communis]
19 Hb_001675_090 0.11888816 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
20 Hb_000719_030 0.1192374289 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_005015_100 Hb_005015_100 Hb_002215_030 Hb_002215_030 Hb_005015_100--Hb_002215_030 Hb_020648_030 Hb_020648_030 Hb_005015_100--Hb_020648_030 Hb_001287_020 Hb_001287_020 Hb_005015_100--Hb_001287_020 Hb_000510_180 Hb_000510_180 Hb_005015_100--Hb_000510_180 Hb_001717_060 Hb_001717_060 Hb_005015_100--Hb_001717_060 Hb_000648_070 Hb_000648_070 Hb_005015_100--Hb_000648_070 Hb_002215_030--Hb_001287_020 Hb_002215_030--Hb_020648_030 Hb_008013_020 Hb_008013_020 Hb_002215_030--Hb_008013_020 Hb_000977_250 Hb_000977_250 Hb_002215_030--Hb_000977_250 Hb_005618_030 Hb_005618_030 Hb_002215_030--Hb_005618_030 Hb_000083_180 Hb_000083_180 Hb_020648_030--Hb_000083_180 Hb_020648_030--Hb_001717_060 Hb_003038_060 Hb_003038_060 Hb_020648_030--Hb_003038_060 Hb_005754_050 Hb_005754_050 Hb_020648_030--Hb_005754_050 Hb_000881_070 Hb_000881_070 Hb_020648_030--Hb_000881_070 Hb_000948_240 Hb_000948_240 Hb_020648_030--Hb_000948_240 Hb_003683_170 Hb_003683_170 Hb_001287_020--Hb_003683_170 Hb_000030_070 Hb_000030_070 Hb_001287_020--Hb_000030_070 Hb_001287_020--Hb_005618_030 Hb_000080_070 Hb_000080_070 Hb_001287_020--Hb_000080_070 Hb_001377_080 Hb_001377_080 Hb_001287_020--Hb_001377_080 Hb_001287_020--Hb_000510_180 Hb_000625_080 Hb_000625_080 Hb_000510_180--Hb_000625_080 Hb_013726_060 Hb_013726_060 Hb_000510_180--Hb_013726_060 Hb_002818_110 Hb_002818_110 Hb_000510_180--Hb_002818_110 Hb_000510_180--Hb_008013_020 Hb_006573_110 Hb_006573_110 Hb_000510_180--Hb_006573_110 Hb_009193_020 Hb_009193_020 Hb_000510_180--Hb_009193_020 Hb_001717_060--Hb_003038_060 Hb_001717_060--Hb_005754_050 Hb_000531_100 Hb_000531_100 Hb_001717_060--Hb_000531_100 Hb_005280_020 Hb_005280_020 Hb_001717_060--Hb_005280_020 Hb_001717_060--Hb_013726_060 Hb_001717_060--Hb_002818_110 Hb_000648_070--Hb_001287_020 Hb_002249_090 Hb_002249_090 Hb_000648_070--Hb_002249_090 Hb_000648_070--Hb_000510_180 Hb_000648_070--Hb_002215_030 Hb_028227_060 Hb_028227_060 Hb_000648_070--Hb_028227_060 Hb_002007_120 Hb_002007_120 Hb_000648_070--Hb_002007_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.33432 0.694917 27.7567 6.19195 0.83318 0.104735
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0237841 0 0.436543 29.441

CAGE analysis