Hb_028227_060

Information

Type -
Description -
Location Contig28227: 39577-40973
Sequence    

Annotation

kegg
ID pop:POPTR_0003s17090g
description POPTRDRAFT_817545; GPI-anchored protein precursor
nr
ID XP_011020739.1
description PREDICTED: non-specific lipid transfer protein GPI-anchored 1-like [Populus euphratica]
swissprot
ID Q9C7F7
description Non-specific lipid transfer protein GPI-anchored 1 OS=Arabidopsis thaliana GN=LTPG1 PE=1 SV=1
trembl
ID B9GZQ5
description GPI-anchored protein OS=Populus trichocarpa GN=POPTR_0003s17090g PE=4 SV=2
Gene Ontology
ID GO:0008289
description non-specific lipid transfer protein gpi-anchored 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29573: 39549-40910 , PASA_asmbl_29574: 40361-40910
cDNA
(Sanger)
(ID:Location)		 015_K11.ab1: 39713-40813 , 020_K11.ab1: 39591-40607 , 021_H02.ab1: 39694-40717 , 040_J16.ab1: 39694-40692 , 040_P23.ab1: 39713-40789 , 046_E06.ab1: 39717-40782 , 046_K05.ab1: 39713-40777 , 053_H01.ab1: 39692-40654

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028227_060 0.0 - - PREDICTED: non-specific lipid transfer protein GPI-anchored 1-like [Populus euphratica]
2 Hb_000974_040 0.0942887884 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Jatropha curcas]
3 Hb_002007_120 0.1025671444 - - PREDICTED: psbP domain-containing protein 7, chloroplastic [Jatropha curcas]
4 Hb_000648_070 0.1037190407 - - PREDICTED: protein TIC 62, chloroplastic [Populus euphratica]
5 Hb_004884_100 0.1049793403 - - PREDICTED: lectin-domain containing receptor kinase VI.4-like [Jatropha curcas]
6 Hb_000268_060 0.1128059692 - - receptor protein kinase, putative [Ricinus communis]
7 Hb_137216_010 0.1151078911 - - PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like isoform X2 [Citrus sinensis]
8 Hb_002215_030 0.1233362611 - - PREDICTED: uncharacterized protein LOC105640840 isoform X1 [Jatropha curcas]
9 Hb_000080_070 0.1247996924 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic [Jatropha curcas]
10 Hb_000393_040 0.1311616913 - - PREDICTED: uncharacterized protein LOC105128208 [Populus euphratica]
11 Hb_003750_110 0.1329899273 - - PREDICTED: aldose 1-epimerase-like [Jatropha curcas]
12 Hb_002495_090 0.1333132374 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
13 Hb_001287_020 0.1337030345 - - SulA [Manihot esculenta]
14 Hb_011930_190 0.134868007 - - PREDICTED: probable beta-1,3-galactosyltransferase 17 isoform X1 [Jatropha curcas]
15 Hb_000123_360 0.1394607613 - - PREDICTED: photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_002042_090 0.1399072353 - - PREDICTED: root phototropism protein 3-like [Jatropha curcas]
17 Hb_003050_140 0.1419895482 - - PREDICTED: potassium channel KAT1 [Jatropha curcas]
18 Hb_001163_110 0.1429290396 - - PREDICTED: serine/threonine-protein kinase D6PKL2 [Jatropha curcas]
19 Hb_000836_620 0.1430905311 - - PREDICTED: protochlorophyllide reductase, chloroplastic [Jatropha curcas]
20 Hb_000142_050 0.1439850107 - - PREDICTED: beta-glucosidase 18-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_028227_060 Hb_028227_060 Hb_000974_040 Hb_000974_040 Hb_028227_060--Hb_000974_040 Hb_002007_120 Hb_002007_120 Hb_028227_060--Hb_002007_120 Hb_000648_070 Hb_000648_070 Hb_028227_060--Hb_000648_070 Hb_004884_100 Hb_004884_100 Hb_028227_060--Hb_004884_100 Hb_000268_060 Hb_000268_060 Hb_028227_060--Hb_000268_060 Hb_137216_010 Hb_137216_010 Hb_028227_060--Hb_137216_010 Hb_177281_010 Hb_177281_010 Hb_000974_040--Hb_177281_010 Hb_000974_040--Hb_137216_010 Hb_001135_070 Hb_001135_070 Hb_000974_040--Hb_001135_070 Hb_000393_040 Hb_000393_040 Hb_000974_040--Hb_000393_040 Hb_000123_360 Hb_000123_360 Hb_000974_040--Hb_000123_360 Hb_110266_010 Hb_110266_010 Hb_002007_120--Hb_110266_010 Hb_000313_250 Hb_000313_250 Hb_002007_120--Hb_000313_250 Hb_048141_050 Hb_048141_050 Hb_002007_120--Hb_048141_050 Hb_092516_010 Hb_092516_010 Hb_002007_120--Hb_092516_010 Hb_000530_040 Hb_000530_040 Hb_002007_120--Hb_000530_040 Hb_000962_090 Hb_000962_090 Hb_002007_120--Hb_000962_090 Hb_001287_020 Hb_001287_020 Hb_000648_070--Hb_001287_020 Hb_002249_090 Hb_002249_090 Hb_000648_070--Hb_002249_090 Hb_000510_180 Hb_000510_180 Hb_000648_070--Hb_000510_180 Hb_002215_030 Hb_002215_030 Hb_000648_070--Hb_002215_030 Hb_000648_070--Hb_002007_120 Hb_004994_280 Hb_004994_280 Hb_004884_100--Hb_004994_280 Hb_004884_100--Hb_002007_120 Hb_004884_100--Hb_000648_070 Hb_004884_100--Hb_000530_040 Hb_003573_030 Hb_003573_030 Hb_004884_100--Hb_003573_030 Hb_000080_070 Hb_000080_070 Hb_000268_060--Hb_000080_070 Hb_003750_110 Hb_003750_110 Hb_000268_060--Hb_003750_110 Hb_000836_620 Hb_000836_620 Hb_000268_060--Hb_000836_620 Hb_005460_040 Hb_005460_040 Hb_000268_060--Hb_005460_040 Hb_011930_190 Hb_011930_190 Hb_000268_060--Hb_011930_190 Hb_002495_090 Hb_002495_090 Hb_137216_010--Hb_002495_090 Hb_137216_010--Hb_000393_040 Hb_000174_080 Hb_000174_080 Hb_137216_010--Hb_000174_080 Hb_000768_120 Hb_000768_120 Hb_137216_010--Hb_000768_120 Hb_000009_510 Hb_000009_510 Hb_137216_010--Hb_000009_510 Hb_000302_230 Hb_000302_230 Hb_137216_010--Hb_000302_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.1776 7.17774 438.195 96.2765 3.64711 1.82713
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.2632 2.47844 3.73679 1.76173 291.39

CAGE analysis