Hb_001135_070

Information

Type -
Description -
Location Contig1135: 71807-75289
Sequence    

Annotation

kegg
ID rcu:RCOM_0744640
description glutathione-s-transferase omega, putative
nr
ID XP_002525064.1
description glutathione-s-transferase omega, putative [Ricinus communis]
swissprot
ID Q8H8U5
description Protein IN2-1 homolog B OS=Oryza sativa subsp. japonica GN=GSTZ5 PE=2 SV=1
trembl
ID B9SGE5
description Glutathione-s-transferase omega, putative OS=Ricinus communis GN=RCOM_0744640 PE=4 SV=1
Gene Ontology
ID GO:0009570
description protein in2-1 homolog b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04033: 71864-75955
cDNA
(Sanger)
(ID:Location)		 010_D14.ab1: 71864-73828 , 010_P20.ab1: 71864-73573 , 027_A11.ab1: 71864-73835

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001135_070 0.0 - - glutathione-s-transferase omega, putative [Ricinus communis]
2 Hb_003517_110 0.1022347404 - - PREDICTED: uncharacterized protein LOC105633058 [Jatropha curcas]
3 Hb_177281_010 0.1046392885 - - PREDICTED: 50S ribosomal protein 5, chloroplastic-like [Citrus sinensis]
4 Hb_001623_380 0.106620474 - - PREDICTED: 7-hydroxymethyl chlorophyll a reductase, chloroplastic [Jatropha curcas]
5 Hb_000974_040 0.1095392505 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Jatropha curcas]
6 Hb_000393_040 0.1103709853 - - PREDICTED: uncharacterized protein LOC105128208 [Populus euphratica]
7 Hb_000123_360 0.1200465586 - - PREDICTED: photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_005000_110 0.1307377163 - - PREDICTED: uncharacterized protein LOC105637872 isoform X1 [Jatropha curcas]
9 Hb_000080_070 0.139073744 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic [Jatropha curcas]
10 Hb_000302_230 0.1408149602 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000268_060 0.1452850722 - - receptor protein kinase, putative [Ricinus communis]
12 Hb_006198_030 0.146284563 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000648_070 0.146771224 - - PREDICTED: protein TIC 62, chloroplastic [Populus euphratica]
14 Hb_023344_090 0.1498502593 - - Photosystem II reaction center W protein, putative [Ricinus communis]
15 Hb_000808_130 0.1505053227 - - 3-5 exonuclease, putative [Ricinus communis]
16 Hb_001488_250 0.151717175 - - conserved hypothetical protein [Ricinus communis]
17 Hb_008707_040 0.1539566907 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000961_060 0.1542069398 - - uvb-resistance protein uvr8, putative [Ricinus communis]
19 Hb_001287_020 0.154698898 - - SulA [Manihot esculenta]
20 Hb_002843_130 0.1547321099 - - PREDICTED: GRF1-interacting factor 2-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001135_070 Hb_001135_070 Hb_003517_110 Hb_003517_110 Hb_001135_070--Hb_003517_110 Hb_177281_010 Hb_177281_010 Hb_001135_070--Hb_177281_010 Hb_001623_380 Hb_001623_380 Hb_001135_070--Hb_001623_380 Hb_000974_040 Hb_000974_040 Hb_001135_070--Hb_000974_040 Hb_000393_040 Hb_000393_040 Hb_001135_070--Hb_000393_040 Hb_000123_360 Hb_000123_360 Hb_001135_070--Hb_000123_360 Hb_004994_280 Hb_004994_280 Hb_003517_110--Hb_004994_280 Hb_003517_110--Hb_000123_360 Hb_003517_110--Hb_000974_040 Hb_110266_010 Hb_110266_010 Hb_003517_110--Hb_110266_010 Hb_004884_100 Hb_004884_100 Hb_003517_110--Hb_004884_100 Hb_177281_010--Hb_000393_040 Hb_177281_010--Hb_000974_040 Hb_177281_010--Hb_001623_380 Hb_137216_010 Hb_137216_010 Hb_177281_010--Hb_137216_010 Hb_002495_090 Hb_002495_090 Hb_177281_010--Hb_002495_090 Hb_008707_040 Hb_008707_040 Hb_001623_380--Hb_008707_040 Hb_003680_060 Hb_003680_060 Hb_001623_380--Hb_003680_060 Hb_002272_220 Hb_002272_220 Hb_001623_380--Hb_002272_220 Hb_001623_380--Hb_000393_040 Hb_028227_060 Hb_028227_060 Hb_000974_040--Hb_028227_060 Hb_000974_040--Hb_137216_010 Hb_000974_040--Hb_000393_040 Hb_000974_040--Hb_000123_360 Hb_000393_040--Hb_137216_010 Hb_000302_230 Hb_000302_230 Hb_000393_040--Hb_000302_230 Hb_000009_510 Hb_000009_510 Hb_000393_040--Hb_000009_510 Hb_000358_160 Hb_000358_160 Hb_000123_360--Hb_000358_160 Hb_000123_360--Hb_110266_010 Hb_001442_050 Hb_001442_050 Hb_000123_360--Hb_001442_050 Hb_002007_120 Hb_002007_120 Hb_000123_360--Hb_002007_120 Hb_000345_400 Hb_000345_400 Hb_000123_360--Hb_000345_400 Hb_000638_220 Hb_000638_220 Hb_000123_360--Hb_000638_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0448582 0.284622 11.1644 2.64648 0.0225019 0.335923
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.30828 0.808196 0 0.276336 8.67326

CAGE analysis