Hb_000009_510

Information

Type -
Description -
Location Contig9: 496667-497839
Sequence    

Annotation

kegg
ID pop:POPTR_0007s12010g
description POPTRDRAFT_563064; hypothetical protein
nr
ID XP_011025671.1
description PREDICTED: uncharacterized protein LOC105126496 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9HEH0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12010g PE=4 SV=2
Gene Ontology
ID GO:0009535
description synechocystis ycf37

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000009_510 0.0 - - PREDICTED: uncharacterized protein LOC105126496 [Populus euphratica]
2 Hb_006681_020 0.0862667459 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic [Jatropha curcas]
3 Hb_000302_230 0.091575657 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002485_050 0.1056978571 - - PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic [Jatropha curcas]
5 Hb_137216_010 0.1076496183 - - PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like isoform X2 [Citrus sinensis]
6 Hb_000174_080 0.1090051302 - - 4-nitrophenylphosphatase, putative [Ricinus communis]
7 Hb_006583_030 0.1090532344 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X4 [Jatropha curcas]
8 Hb_002495_090 0.1095977423 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
9 Hb_000393_040 0.1099256113 - - PREDICTED: uncharacterized protein LOC105128208 [Populus euphratica]
10 Hb_000768_120 0.1253218307 - - PREDICTED: RNA polymerase sigma factor sigB [Jatropha curcas]
11 Hb_015175_040 0.1266913259 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001999_260 0.1283475393 - - PREDICTED: 50S ribosomal protein L4, chloroplastic [Jatropha curcas]
13 Hb_008707_040 0.1284113323 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000544_070 0.1284169819 - - Peptidyl-prolyl cis-trans isomerase FKBP17-2 [Morus notabilis]
15 Hb_000648_070 0.1292109569 - - PREDICTED: protein TIC 62, chloroplastic [Populus euphratica]
16 Hb_000703_070 0.1293718213 - - PREDICTED: uncharacterized protein LOC105635704 isoform X1 [Jatropha curcas]
17 Hb_007803_040 0.1299686761 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic [Jatropha curcas]
18 Hb_004007_170 0.1349977747 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
19 Hb_005488_190 0.1351655802 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
20 Hb_027298_020 0.1361103335 - - hypothetical protein POPTR_0005s05760g [Populus trichocarpa]

Gene co-expression network

sample Hb_000009_510 Hb_000009_510 Hb_006681_020 Hb_006681_020 Hb_000009_510--Hb_006681_020 Hb_000302_230 Hb_000302_230 Hb_000009_510--Hb_000302_230 Hb_002485_050 Hb_002485_050 Hb_000009_510--Hb_002485_050 Hb_137216_010 Hb_137216_010 Hb_000009_510--Hb_137216_010 Hb_000174_080 Hb_000174_080 Hb_000009_510--Hb_000174_080 Hb_006583_030 Hb_006583_030 Hb_000009_510--Hb_006583_030 Hb_000768_120 Hb_000768_120 Hb_006681_020--Hb_000768_120 Hb_001999_260 Hb_001999_260 Hb_006681_020--Hb_001999_260 Hb_004855_070 Hb_004855_070 Hb_006681_020--Hb_004855_070 Hb_006681_020--Hb_006583_030 Hb_004117_150 Hb_004117_150 Hb_006681_020--Hb_004117_150 Hb_000393_040 Hb_000393_040 Hb_000302_230--Hb_000393_040 Hb_000302_230--Hb_006583_030 Hb_000302_230--Hb_006681_020 Hb_000302_230--Hb_137216_010 Hb_003680_060 Hb_003680_060 Hb_000302_230--Hb_003680_060 Hb_003605_060 Hb_003605_060 Hb_002485_050--Hb_003605_060 Hb_007803_040 Hb_007803_040 Hb_002485_050--Hb_007803_040 Hb_000856_280 Hb_000856_280 Hb_002485_050--Hb_000856_280 Hb_000544_070 Hb_000544_070 Hb_002485_050--Hb_000544_070 Hb_074548_010 Hb_074548_010 Hb_002485_050--Hb_074548_010 Hb_009393_130 Hb_009393_130 Hb_002485_050--Hb_009393_130 Hb_002495_090 Hb_002495_090 Hb_137216_010--Hb_002495_090 Hb_137216_010--Hb_000393_040 Hb_137216_010--Hb_000174_080 Hb_137216_010--Hb_000768_120 Hb_002249_090 Hb_002249_090 Hb_000174_080--Hb_002249_090 Hb_002071_030 Hb_002071_030 Hb_000174_080--Hb_002071_030 Hb_003602_100 Hb_003602_100 Hb_000174_080--Hb_003602_100 Hb_000174_080--Hb_007803_040 Hb_006583_030--Hb_001999_260 Hb_006583_030--Hb_004855_070 Hb_001047_180 Hb_001047_180 Hb_006583_030--Hb_001047_180 Hb_010557_010 Hb_010557_010 Hb_006583_030--Hb_010557_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.46822 5.89043 74.4126 11.837 2.01614 0.756442
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.02124 4.02622 1.34176 2.27285 72.961

CAGE analysis