Hb_000393_040

Information

Type -
Description -
Location Contig393: 162838-170363
Sequence    

Annotation

kegg
ID pop:POPTR_0003s09960g
description POPTRDRAFT_852909; hypothetical protein
nr
ID XP_011028076.1
description PREDICTED: uncharacterized protein LOC105128208 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9GZU5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s09960g PE=4 SV=2
Gene Ontology
ID GO:0009507
description protein low psii accumulation chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39398: 162767-170389 , PASA_asmbl_39399: 162817-170313 , PASA_asmbl_39400: 162817-163414
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000393_040 0.0 - - PREDICTED: uncharacterized protein LOC105128208 [Populus euphratica]
2 Hb_137216_010 0.0914021918 - - PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like isoform X2 [Citrus sinensis]
3 Hb_000302_230 0.0959022861 - - conserved hypothetical protein [Ricinus communis]
4 Hb_177281_010 0.1020481095 - - PREDICTED: 50S ribosomal protein 5, chloroplastic-like [Citrus sinensis]
5 Hb_000009_510 0.1099256113 - - PREDICTED: uncharacterized protein LOC105126496 [Populus euphratica]
6 Hb_001135_070 0.1103709853 - - glutathione-s-transferase omega, putative [Ricinus communis]
7 Hb_000974_040 0.1130337588 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Jatropha curcas]
8 Hb_000648_070 0.114250926 - - PREDICTED: protein TIC 62, chloroplastic [Populus euphratica]
9 Hb_002307_190 0.1185635752 - - PREDICTED: putative ion channel POLLUX-like 2 [Jatropha curcas]
10 Hb_002495_090 0.1199520072 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
11 Hb_000174_080 0.1220250935 - - 4-nitrophenylphosphatase, putative [Ricinus communis]
12 Hb_001623_380 0.1223122996 - - PREDICTED: 7-hydroxymethyl chlorophyll a reductase, chloroplastic [Jatropha curcas]
13 Hb_002249_090 0.1292514843 - - PREDICTED: magnesium protoporphyrin IX methyltransferase, chloroplastic [Jatropha curcas]
14 Hb_028227_060 0.1311616913 - - PREDICTED: non-specific lipid transfer protein GPI-anchored 1-like [Populus euphratica]
15 Hb_011519_050 0.1318914707 - - hypothetical protein POPTR_0015s04810g [Populus trichocarpa]
16 Hb_004007_170 0.135574174 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
17 Hb_006681_020 0.1364196067 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic [Jatropha curcas]
18 Hb_000123_360 0.1366472812 - - PREDICTED: photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_003517_110 0.138428063 - - PREDICTED: uncharacterized protein LOC105633058 [Jatropha curcas]
20 Hb_007803_040 0.1442858553 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000393_040 Hb_000393_040 Hb_137216_010 Hb_137216_010 Hb_000393_040--Hb_137216_010 Hb_000302_230 Hb_000302_230 Hb_000393_040--Hb_000302_230 Hb_177281_010 Hb_177281_010 Hb_000393_040--Hb_177281_010 Hb_000009_510 Hb_000009_510 Hb_000393_040--Hb_000009_510 Hb_001135_070 Hb_001135_070 Hb_000393_040--Hb_001135_070 Hb_000974_040 Hb_000974_040 Hb_000393_040--Hb_000974_040 Hb_002495_090 Hb_002495_090 Hb_137216_010--Hb_002495_090 Hb_000174_080 Hb_000174_080 Hb_137216_010--Hb_000174_080 Hb_000768_120 Hb_000768_120 Hb_137216_010--Hb_000768_120 Hb_137216_010--Hb_000009_510 Hb_137216_010--Hb_000302_230 Hb_000302_230--Hb_000009_510 Hb_006583_030 Hb_006583_030 Hb_000302_230--Hb_006583_030 Hb_006681_020 Hb_006681_020 Hb_000302_230--Hb_006681_020 Hb_003680_060 Hb_003680_060 Hb_000302_230--Hb_003680_060 Hb_177281_010--Hb_001135_070 Hb_177281_010--Hb_000974_040 Hb_001623_380 Hb_001623_380 Hb_177281_010--Hb_001623_380 Hb_177281_010--Hb_137216_010 Hb_177281_010--Hb_002495_090 Hb_000009_510--Hb_006681_020 Hb_002485_050 Hb_002485_050 Hb_000009_510--Hb_002485_050 Hb_000009_510--Hb_000174_080 Hb_000009_510--Hb_006583_030 Hb_003517_110 Hb_003517_110 Hb_001135_070--Hb_003517_110 Hb_001135_070--Hb_001623_380 Hb_001135_070--Hb_000974_040 Hb_000123_360 Hb_000123_360 Hb_001135_070--Hb_000123_360 Hb_028227_060 Hb_028227_060 Hb_000974_040--Hb_028227_060 Hb_000974_040--Hb_137216_010 Hb_000974_040--Hb_000123_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.415115 0.46424 15.4641 3.46125 0.296631 0.288726
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.06225 0.835576 0.0597665 0.180255 14.6275

CAGE analysis