Hb_001623_380

Information

Type -
Description -
Location Contig1623: 263254-269067
Sequence    

Annotation

kegg
ID rcu:RCOM_1023920
description Coenzyme F420 hydrogenase subunit beta, putative (EC:1.12.98.1)
nr
ID XP_012077658.1
description PREDICTED: 7-hydroxymethyl chlorophyll a reductase, chloroplastic [Jatropha curcas]
swissprot
ID Q8GS60
description 7-hydroxymethyl chlorophyll a reductase, chloroplastic OS=Arabidopsis thaliana GN=HCAR PE=1 SV=1
trembl
ID A0A067KM57
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12914 PE=4 SV=1
Gene Ontology
ID GO:0050454
description 7-hydroxymethyl chlorophyll a chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14712: 263196-269098 , PASA_asmbl_14713: 263196-269037 , PASA_asmbl_14714: 265640-265964
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001623_380 0.0 - - PREDICTED: 7-hydroxymethyl chlorophyll a reductase, chloroplastic [Jatropha curcas]
2 Hb_001135_070 0.106620474 - - glutathione-s-transferase omega, putative [Ricinus communis]
3 Hb_008707_040 0.1161324844 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003680_060 0.1176566198 - - hypothetical protein VITISV_022322 [Vitis vinifera]
5 Hb_002272_220 0.1188161732 - - conserved hypothetical protein [Ricinus communis]
6 Hb_177281_010 0.1206673605 - - PREDICTED: 50S ribosomal protein 5, chloroplastic-like [Citrus sinensis]
7 Hb_000393_040 0.1223122996 - - PREDICTED: uncharacterized protein LOC105128208 [Populus euphratica]
8 Hb_000302_230 0.1282702258 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000711_030 0.1326286463 - - hypothetical protein POPTR_0019s02860g [Populus trichocarpa]
10 Hb_009393_130 0.1332343155 - - PREDICTED: uncharacterized protein LOC105638053 isoform X4 [Jatropha curcas]
11 Hb_015175_040 0.1336289858 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000123_360 0.1352778959 - - PREDICTED: photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_005000_110 0.1361026465 - - PREDICTED: uncharacterized protein LOC105637872 isoform X1 [Jatropha curcas]
14 Hb_000009_510 0.1362547706 - - PREDICTED: uncharacterized protein LOC105126496 [Populus euphratica]
15 Hb_010557_010 0.1381296739 - - PREDICTED: 50S ribosomal protein L3, chloroplastic [Jatropha curcas]
16 Hb_121089_010 0.1394420904 - - PREDICTED: uncharacterized protein LOC105645663 [Jatropha curcas]
17 Hb_006583_030 0.1414224865 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X4 [Jatropha curcas]
18 Hb_009838_070 0.1454581498 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Jatropha curcas]
19 Hb_004007_170 0.1493750862 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
20 Hb_004650_050 0.1494079234 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001623_380 Hb_001623_380 Hb_001135_070 Hb_001135_070 Hb_001623_380--Hb_001135_070 Hb_008707_040 Hb_008707_040 Hb_001623_380--Hb_008707_040 Hb_003680_060 Hb_003680_060 Hb_001623_380--Hb_003680_060 Hb_002272_220 Hb_002272_220 Hb_001623_380--Hb_002272_220 Hb_177281_010 Hb_177281_010 Hb_001623_380--Hb_177281_010 Hb_000393_040 Hb_000393_040 Hb_001623_380--Hb_000393_040 Hb_003517_110 Hb_003517_110 Hb_001135_070--Hb_003517_110 Hb_001135_070--Hb_177281_010 Hb_000974_040 Hb_000974_040 Hb_001135_070--Hb_000974_040 Hb_001135_070--Hb_000393_040 Hb_000123_360 Hb_000123_360 Hb_001135_070--Hb_000123_360 Hb_008707_040--Hb_003680_060 Hb_006583_030 Hb_006583_030 Hb_008707_040--Hb_006583_030 Hb_000009_510 Hb_000009_510 Hb_008707_040--Hb_000009_510 Hb_000302_230 Hb_000302_230 Hb_008707_040--Hb_000302_230 Hb_015175_040 Hb_015175_040 Hb_008707_040--Hb_015175_040 Hb_009393_130 Hb_009393_130 Hb_003680_060--Hb_009393_130 Hb_009838_070 Hb_009838_070 Hb_003680_060--Hb_009838_070 Hb_000116_220 Hb_000116_220 Hb_003680_060--Hb_000116_220 Hb_004650_050 Hb_004650_050 Hb_003680_060--Hb_004650_050 Hb_091433_050 Hb_091433_050 Hb_003680_060--Hb_091433_050 Hb_000711_030 Hb_000711_030 Hb_003680_060--Hb_000711_030 Hb_002411_100 Hb_002411_100 Hb_002272_220--Hb_002411_100 Hb_000390_210 Hb_000390_210 Hb_002272_220--Hb_000390_210 Hb_010557_010 Hb_010557_010 Hb_002272_220--Hb_010557_010 Hb_002272_220--Hb_009393_130 Hb_000684_200 Hb_000684_200 Hb_002272_220--Hb_000684_200 Hb_177281_010--Hb_000393_040 Hb_177281_010--Hb_000974_040 Hb_137216_010 Hb_137216_010 Hb_177281_010--Hb_137216_010 Hb_002495_090 Hb_002495_090 Hb_177281_010--Hb_002495_090 Hb_000393_040--Hb_137216_010 Hb_000393_040--Hb_000302_230 Hb_000393_040--Hb_000009_510 Hb_000393_040--Hb_000974_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.579157 2.0426 33.817 10.3145 0.269503 0.29955
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.46765 4.27911 0.255894 1.74257 28.8333

CAGE analysis