Hb_015175_040

Information

Type -
Description -
Location Contig15175: 47290-50159
Sequence    

Annotation

kegg
ID rcu:RCOM_1602050
description hypothetical protein
nr
ID XP_002510727.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9S720
description PsbP domain-containing protein 3, chloroplastic OS=Arabidopsis thaliana GN=PPD3 PE=1 SV=2
trembl
ID B9R8T4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1602050 PE=4 SV=1
Gene Ontology
ID GO:0009654
description psbp domain-containing protein chloroplastic isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12894: 47457-49417
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015175_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006583_030 0.106409799 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X4 [Jatropha curcas]
3 Hb_005488_160 0.1076660992 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
4 Hb_010557_010 0.1094078096 - - PREDICTED: 50S ribosomal protein L3, chloroplastic [Jatropha curcas]
5 Hb_000442_070 0.1100717898 - - PREDICTED: uncharacterized protein LOC105645538 [Jatropha curcas]
6 Hb_002411_100 0.1194007857 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
7 Hb_000302_230 0.121227905 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000009_510 0.1266913259 - - PREDICTED: uncharacterized protein LOC105126496 [Populus euphratica]
9 Hb_001366_350 0.1296829402 - - PREDICTED: peptidyl-prolyl cis-trans isomerase isoform X2 [Jatropha curcas]
10 Hb_001047_180 0.1299605694 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001623_380 0.1336289858 - - PREDICTED: 7-hydroxymethyl chlorophyll a reductase, chloroplastic [Jatropha curcas]
12 Hb_011114_020 0.1348440443 - - PREDICTED: 50S ribosomal protein L12-1, chloroplastic-like [Jatropha curcas]
13 Hb_005563_040 0.1354622163 - - PREDICTED: uncharacterized protein LOC105630105 isoform X1 [Jatropha curcas]
14 Hb_000703_070 0.1389244183 - - PREDICTED: uncharacterized protein LOC105635704 isoform X1 [Jatropha curcas]
15 Hb_008707_040 0.1391098572 - - conserved hypothetical protein [Ricinus communis]
16 Hb_058620_080 0.141591472 - - PREDICTED: phosphoglycerate kinase, chloroplastic [Jatropha curcas]
17 Hb_000099_050 0.141820235 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003948_020 0.1434487132 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
19 Hb_000834_060 0.1439044671 - - PREDICTED: probable chlorophyll(ide) b reductase NYC1, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_000368_120 0.1465157491 - - PREDICTED: uncharacterized protein LOC105633862 [Jatropha curcas]

Gene co-expression network

sample Hb_015175_040 Hb_015175_040 Hb_006583_030 Hb_006583_030 Hb_015175_040--Hb_006583_030 Hb_005488_160 Hb_005488_160 Hb_015175_040--Hb_005488_160 Hb_010557_010 Hb_010557_010 Hb_015175_040--Hb_010557_010 Hb_000442_070 Hb_000442_070 Hb_015175_040--Hb_000442_070 Hb_002411_100 Hb_002411_100 Hb_015175_040--Hb_002411_100 Hb_000302_230 Hb_000302_230 Hb_015175_040--Hb_000302_230 Hb_006681_020 Hb_006681_020 Hb_006583_030--Hb_006681_020 Hb_001999_260 Hb_001999_260 Hb_006583_030--Hb_001999_260 Hb_004855_070 Hb_004855_070 Hb_006583_030--Hb_004855_070 Hb_006583_030--Hb_000302_230 Hb_001047_180 Hb_001047_180 Hb_006583_030--Hb_001047_180 Hb_006583_030--Hb_010557_010 Hb_005563_040 Hb_005563_040 Hb_005488_160--Hb_005563_040 Hb_005488_160--Hb_002411_100 Hb_007694_060 Hb_007694_060 Hb_005488_160--Hb_007694_060 Hb_005488_160--Hb_010557_010 Hb_000703_070 Hb_000703_070 Hb_005488_160--Hb_000703_070 Hb_010557_010--Hb_002411_100 Hb_002811_250 Hb_002811_250 Hb_010557_010--Hb_002811_250 Hb_010557_010--Hb_000703_070 Hb_000803_170 Hb_000803_170 Hb_010557_010--Hb_000803_170 Hb_009393_130 Hb_009393_130 Hb_010557_010--Hb_009393_130 Hb_000045_050 Hb_000045_050 Hb_010557_010--Hb_000045_050 Hb_000442_070--Hb_010557_010 Hb_000442_070--Hb_005563_040 Hb_011114_020 Hb_011114_020 Hb_000442_070--Hb_011114_020 Hb_000442_070--Hb_002411_100 Hb_006620_070 Hb_006620_070 Hb_000442_070--Hb_006620_070 Hb_003948_020 Hb_003948_020 Hb_000442_070--Hb_003948_020 Hb_002411_100--Hb_003948_020 Hb_002411_100--Hb_000703_070 Hb_002411_100--Hb_001047_180 Hb_004459_060 Hb_004459_060 Hb_002411_100--Hb_004459_060 Hb_002411_100--Hb_005563_040 Hb_000009_510 Hb_000009_510 Hb_000302_230--Hb_000009_510 Hb_000393_040 Hb_000393_040 Hb_000302_230--Hb_000393_040 Hb_000302_230--Hb_006681_020 Hb_137216_010 Hb_137216_010 Hb_000302_230--Hb_137216_010 Hb_003680_060 Hb_003680_060 Hb_000302_230--Hb_003680_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.517407 2.00159 20.5951 4.29317 0.261404 0.345153
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.48733 2.37001 1.84642 0.732398 19.4878

CAGE analysis