Hb_001999_260

Information

Type -
Description -
Location Contig1999: 227266-229426
Sequence    

Annotation

kegg
ID rcu:RCOM_0611440
description 50S ribosomal protein L4, putative
nr
ID XP_012067974.1
description PREDICTED: 50S ribosomal protein L4, chloroplastic [Jatropha curcas]
swissprot
ID O50061
description 50S ribosomal protein L4, chloroplastic OS=Arabidopsis thaliana GN=RPL4 PE=2 SV=2
trembl
ID A0A067LDF9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08498 PE=3 SV=1
Gene Ontology
ID GO:0000311
description 50s ribosomal protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20047: 227226-229409
cDNA
(Sanger)
(ID:Location)		 017_J24.ab1: 227250-227986 , 026_H07.ab1: 227283-227882 , 027_O02.ab1: 227258-227870 , 031_I20.ab1: 227278-227986

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001999_260 0.0 - - PREDICTED: 50S ribosomal protein L4, chloroplastic [Jatropha curcas]
2 Hb_004208_090 0.0565119339 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
3 Hb_006681_020 0.0708291605 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic [Jatropha curcas]
4 Hb_006583_030 0.0813975577 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X4 [Jatropha curcas]
5 Hb_004117_150 0.0823180207 - - PREDICTED: uncharacterized protein LOC105649105 [Jatropha curcas]
6 Hb_005000_060 0.0934565025 - - PREDICTED: uncharacterized protein LOC105637867 [Jatropha curcas]
7 Hb_000934_260 0.0942479939 - - Thylakoid lumenal 29.8 kDa protein, chloroplast precursor, putative [Ricinus communis]
8 Hb_000768_120 0.095432558 - - PREDICTED: RNA polymerase sigma factor sigB [Jatropha curcas]
9 Hb_004855_070 0.0963720984 - - PLASTID-SPECIFIC RIBOSOMAL protein 4 [Populus trichocarpa]
10 Hb_000637_070 0.100064026 - - PREDICTED: uncharacterized protein LOC105650668 [Jatropha curcas]
11 Hb_003470_100 0.1125168543 - - protein binding protein, putative [Ricinus communis]
12 Hb_000703_070 0.1181963838 - - PREDICTED: uncharacterized protein LOC105635704 isoform X1 [Jatropha curcas]
13 Hb_001047_180 0.1186559607 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004007_170 0.1187292284 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
15 Hb_000062_480 0.1195298862 - - PREDICTED: 4-coumarate--CoA ligase-like 9 isoform X1 [Jatropha curcas]
16 Hb_137600_010 0.1211276397 - - 50S ribosomal protein L1p, putative [Ricinus communis]
17 Hb_000322_040 0.1236225964 - - PREDICTED: lycopene epsilon cyclase, chloroplastic [Jatropha curcas]
18 Hb_050514_020 0.123859167 - - PREDICTED: abscisic acid receptor PYL4 [Jatropha curcas]
19 Hb_005488_190 0.1276869369 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
20 Hb_000009_510 0.1283475393 - - PREDICTED: uncharacterized protein LOC105126496 [Populus euphratica]

Gene co-expression network

sample Hb_001999_260 Hb_001999_260 Hb_004208_090 Hb_004208_090 Hb_001999_260--Hb_004208_090 Hb_006681_020 Hb_006681_020 Hb_001999_260--Hb_006681_020 Hb_006583_030 Hb_006583_030 Hb_001999_260--Hb_006583_030 Hb_004117_150 Hb_004117_150 Hb_001999_260--Hb_004117_150 Hb_005000_060 Hb_005000_060 Hb_001999_260--Hb_005000_060 Hb_000934_260 Hb_000934_260 Hb_001999_260--Hb_000934_260 Hb_004208_090--Hb_000934_260 Hb_004208_090--Hb_004117_150 Hb_004208_090--Hb_006681_020 Hb_004855_070 Hb_004855_070 Hb_004208_090--Hb_004855_070 Hb_000768_120 Hb_000768_120 Hb_004208_090--Hb_000768_120 Hb_006681_020--Hb_000768_120 Hb_006681_020--Hb_004855_070 Hb_006681_020--Hb_006583_030 Hb_006681_020--Hb_004117_150 Hb_000009_510 Hb_000009_510 Hb_006681_020--Hb_000009_510 Hb_006583_030--Hb_004855_070 Hb_000302_230 Hb_000302_230 Hb_006583_030--Hb_000302_230 Hb_001047_180 Hb_001047_180 Hb_006583_030--Hb_001047_180 Hb_010557_010 Hb_010557_010 Hb_006583_030--Hb_010557_010 Hb_004007_170 Hb_004007_170 Hb_004117_150--Hb_004007_170 Hb_004117_150--Hb_000768_120 Hb_000703_070 Hb_000703_070 Hb_004117_150--Hb_000703_070 Hb_000146_030 Hb_000146_030 Hb_005000_060--Hb_000146_030 Hb_148146_010 Hb_148146_010 Hb_005000_060--Hb_148146_010 Hb_005000_060--Hb_004208_090 Hb_005000_060--Hb_006583_030 Hb_050514_020 Hb_050514_020 Hb_005000_060--Hb_050514_020 Hb_000637_070 Hb_000637_070 Hb_000934_260--Hb_000637_070 Hb_000322_040 Hb_000322_040 Hb_000934_260--Hb_000322_040 Hb_000934_260--Hb_050514_020 Hb_006846_160 Hb_006846_160 Hb_000934_260--Hb_006846_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.1405 39.9126 296.105 52.2085 20.1386 18.0605
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.61005 13.1202 11.2651 11.7987 228.05

CAGE analysis