Hb_000637_070

Information

Type -
Description -
Location Contig637: 105979-107630
Sequence    

Annotation

kegg
ID rcu:RCOM_0149220
description hypothetical protein
nr
ID XP_012092996.1
description PREDICTED: uncharacterized protein LOC105650668 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JJF5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05879 PE=4 SV=1
Gene Ontology
ID GO:0009507
description at-rich interactive domain-containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51966: 105945-107798
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000637_070 0.0 - - PREDICTED: uncharacterized protein LOC105650668 [Jatropha curcas]
2 Hb_000934_260 0.0788914166 - - Thylakoid lumenal 29.8 kDa protein, chloroplast precursor, putative [Ricinus communis]
3 Hb_001999_260 0.100064026 - - PREDICTED: 50S ribosomal protein L4, chloroplastic [Jatropha curcas]
4 Hb_004208_090 0.1099128877 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
5 Hb_001975_050 0.1103918569 - - Tyrosine-specific transport protein, putative [Ricinus communis]
6 Hb_050514_020 0.1271972641 - - PREDICTED: abscisic acid receptor PYL4 [Jatropha curcas]
7 Hb_003470_100 0.1281278461 - - protein binding protein, putative [Ricinus communis]
8 Hb_000322_040 0.1309382648 - - PREDICTED: lycopene epsilon cyclase, chloroplastic [Jatropha curcas]
9 Hb_002435_090 0.1353191875 - - PREDICTED: membrane-associated 30 kDa protein, chloroplastic [Jatropha curcas]
10 Hb_004117_150 0.1361374952 - - PREDICTED: uncharacterized protein LOC105649105 [Jatropha curcas]
11 Hb_005000_060 0.144471438 - - PREDICTED: uncharacterized protein LOC105637867 [Jatropha curcas]
12 Hb_006252_030 0.1455438772 - - PREDICTED: uncharacterized protein LOC105638333 [Jatropha curcas]
13 Hb_006846_160 0.1462494663 - - electron transporter, putative [Ricinus communis]
14 Hb_002400_010 0.1481270102 - - PREDICTED: putative L-ascorbate peroxidase 6 [Jatropha curcas]
15 Hb_006681_020 0.1483093679 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic [Jatropha curcas]
16 Hb_000169_070 0.1488933937 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
17 Hb_003992_050 0.1490402413 - - delta 9 desaturase, putative [Ricinus communis]
18 Hb_004855_070 0.1526173009 - - PLASTID-SPECIFIC RIBOSOMAL protein 4 [Populus trichocarpa]
19 Hb_173660_010 0.1530920562 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Malus domestica]
20 Hb_000768_120 0.1560778326 - - PREDICTED: RNA polymerase sigma factor sigB [Jatropha curcas]

Gene co-expression network

sample Hb_000637_070 Hb_000637_070 Hb_000934_260 Hb_000934_260 Hb_000637_070--Hb_000934_260 Hb_001999_260 Hb_001999_260 Hb_000637_070--Hb_001999_260 Hb_004208_090 Hb_004208_090 Hb_000637_070--Hb_004208_090 Hb_001975_050 Hb_001975_050 Hb_000637_070--Hb_001975_050 Hb_050514_020 Hb_050514_020 Hb_000637_070--Hb_050514_020 Hb_003470_100 Hb_003470_100 Hb_000637_070--Hb_003470_100 Hb_000934_260--Hb_004208_090 Hb_000322_040 Hb_000322_040 Hb_000934_260--Hb_000322_040 Hb_000934_260--Hb_001999_260 Hb_000934_260--Hb_050514_020 Hb_006846_160 Hb_006846_160 Hb_000934_260--Hb_006846_160 Hb_001999_260--Hb_004208_090 Hb_006681_020 Hb_006681_020 Hb_001999_260--Hb_006681_020 Hb_006583_030 Hb_006583_030 Hb_001999_260--Hb_006583_030 Hb_004117_150 Hb_004117_150 Hb_001999_260--Hb_004117_150 Hb_005000_060 Hb_005000_060 Hb_001999_260--Hb_005000_060 Hb_004208_090--Hb_004117_150 Hb_004208_090--Hb_006681_020 Hb_004855_070 Hb_004855_070 Hb_004208_090--Hb_004855_070 Hb_000768_120 Hb_000768_120 Hb_004208_090--Hb_000768_120 Hb_188739_010 Hb_188739_010 Hb_001975_050--Hb_188739_010 Hb_002435_090 Hb_002435_090 Hb_001975_050--Hb_002435_090 Hb_001343_120 Hb_001343_120 Hb_001975_050--Hb_001343_120 Hb_003992_050 Hb_003992_050 Hb_001975_050--Hb_003992_050 Hb_027654_070 Hb_027654_070 Hb_001975_050--Hb_027654_070 Hb_050514_020--Hb_003470_100 Hb_050514_020--Hb_005000_060 Hb_050514_020--Hb_001999_260 Hb_009545_070 Hb_009545_070 Hb_050514_020--Hb_009545_070 Hb_004007_170 Hb_004007_170 Hb_003470_100--Hb_004007_170 Hb_003470_100--Hb_004855_070 Hb_003470_100--Hb_001999_260 Hb_003470_100--Hb_004208_090 Hb_001047_180 Hb_001047_180 Hb_003470_100--Hb_001047_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.2579 64.6508 354.791 39.2609 31.5533 25.4058
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.0352 9.21793 8.05056 12.7151 217.5

CAGE analysis