Hb_003470_100

Information

Type -
Description -
Location Contig3470: 93486-98042
Sequence    

Annotation

kegg
ID rcu:RCOM_0342940
description protein binding protein, putative
nr
ID XP_002523407.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID Q9SRY4
description Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana GN=LPA1 PE=1 SV=1
trembl
ID B9SBN8
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_0342940 PE=4 SV=1
Gene Ontology
ID GO:0009534
description protein binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003470_100 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_004007_170 0.0795835176 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
3 Hb_050514_020 0.0987201282 - - PREDICTED: abscisic acid receptor PYL4 [Jatropha curcas]
4 Hb_004855_070 0.1104118714 - - PLASTID-SPECIFIC RIBOSOMAL protein 4 [Populus trichocarpa]
5 Hb_001999_260 0.1125168543 - - PREDICTED: 50S ribosomal protein L4, chloroplastic [Jatropha curcas]
6 Hb_004208_090 0.1151167932 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
7 Hb_001047_180 0.116398648 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000934_260 0.1177770045 - - Thylakoid lumenal 29.8 kDa protein, chloroplast precursor, putative [Ricinus communis]
9 Hb_000146_030 0.1182819509 - - PREDICTED: 50S ribosomal protein L10, chloroplastic [Jatropha curcas]
10 Hb_000169_070 0.1207039405 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
11 Hb_000322_040 0.1219202718 - - PREDICTED: lycopene epsilon cyclase, chloroplastic [Jatropha curcas]
12 Hb_006681_020 0.1263155546 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic [Jatropha curcas]
13 Hb_009545_070 0.1274382987 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Jatropha curcas]
14 Hb_000302_230 0.1278422024 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000637_070 0.1281278461 - - PREDICTED: uncharacterized protein LOC105650668 [Jatropha curcas]
16 Hb_004117_150 0.129346862 - - PREDICTED: uncharacterized protein LOC105649105 [Jatropha curcas]
17 Hb_006252_030 0.1327491308 - - PREDICTED: uncharacterized protein LOC105638333 [Jatropha curcas]
18 Hb_006583_030 0.1336312162 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X4 [Jatropha curcas]
19 Hb_000703_070 0.140251243 - - PREDICTED: uncharacterized protein LOC105635704 isoform X1 [Jatropha curcas]
20 Hb_001343_120 0.1409257022 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003470_100 Hb_003470_100 Hb_004007_170 Hb_004007_170 Hb_003470_100--Hb_004007_170 Hb_050514_020 Hb_050514_020 Hb_003470_100--Hb_050514_020 Hb_004855_070 Hb_004855_070 Hb_003470_100--Hb_004855_070 Hb_001999_260 Hb_001999_260 Hb_003470_100--Hb_001999_260 Hb_004208_090 Hb_004208_090 Hb_003470_100--Hb_004208_090 Hb_001047_180 Hb_001047_180 Hb_003470_100--Hb_001047_180 Hb_004117_150 Hb_004117_150 Hb_004007_170--Hb_004117_150 Hb_006681_020 Hb_006681_020 Hb_004007_170--Hb_006681_020 Hb_000146_030 Hb_000146_030 Hb_004007_170--Hb_000146_030 Hb_004007_170--Hb_001047_180 Hb_004007_170--Hb_004855_070 Hb_000934_260 Hb_000934_260 Hb_050514_020--Hb_000934_260 Hb_005000_060 Hb_005000_060 Hb_050514_020--Hb_005000_060 Hb_050514_020--Hb_001999_260 Hb_009545_070 Hb_009545_070 Hb_050514_020--Hb_009545_070 Hb_000637_070 Hb_000637_070 Hb_050514_020--Hb_000637_070 Hb_004855_070--Hb_006681_020 Hb_000768_120 Hb_000768_120 Hb_004855_070--Hb_000768_120 Hb_004855_070--Hb_004208_090 Hb_006583_030 Hb_006583_030 Hb_004855_070--Hb_006583_030 Hb_004855_070--Hb_001999_260 Hb_000134_040 Hb_000134_040 Hb_004855_070--Hb_000134_040 Hb_001999_260--Hb_004208_090 Hb_001999_260--Hb_006681_020 Hb_001999_260--Hb_006583_030 Hb_001999_260--Hb_004117_150 Hb_001999_260--Hb_005000_060 Hb_001999_260--Hb_000934_260 Hb_004208_090--Hb_000934_260 Hb_004208_090--Hb_004117_150 Hb_004208_090--Hb_006681_020 Hb_004208_090--Hb_000768_120 Hb_001047_180--Hb_000146_030 Hb_002411_100 Hb_002411_100 Hb_001047_180--Hb_002411_100 Hb_010557_010 Hb_010557_010 Hb_001047_180--Hb_010557_010 Hb_001047_180--Hb_006583_030 Hb_000703_070 Hb_000703_070 Hb_001047_180--Hb_000703_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.21044 3.9743 30.9266 5.76798 0.901489 3.01298
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.94997 2.11282 0.162171 1.28509 20.2139

CAGE analysis