Hb_000134_040

Information

Type -
Description -
Location Contig134: 27253-29006
Sequence    

Annotation

kegg
ID pop:POPTR_0009s07030g
description POPTRDRAFT_1087747; hypothetical protein
nr
ID XP_012070187.1
description PREDICTED: 30S ribosomal protein 2, chloroplastic [Jatropha curcas]
swissprot
ID P82277
description 30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1
trembl
ID A0A067L6U8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04908 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 30s ribosomal protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09586: 27283-28867
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000134_040 0.0 - - PREDICTED: 30S ribosomal protein 2, chloroplastic [Jatropha curcas]
2 Hb_002495_090 0.0890872631 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
3 Hb_004855_070 0.0967096481 - - PLASTID-SPECIFIC RIBOSOMAL protein 4 [Populus trichocarpa]
4 Hb_009838_070 0.0972792441 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Jatropha curcas]
5 Hb_007479_010 0.0985614877 - - Root phototropism protein, putative [Ricinus communis]
6 Hb_003680_060 0.1063128375 - - hypothetical protein VITISV_022322 [Vitis vinifera]
7 Hb_000327_260 0.1082336579 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005488_190 0.1098304383 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
9 Hb_000768_120 0.1122978007 - - PREDICTED: RNA polymerase sigma factor sigB [Jatropha curcas]
10 Hb_009393_130 0.1141256506 - - PREDICTED: uncharacterized protein LOC105638053 isoform X4 [Jatropha curcas]
11 Hb_006583_030 0.1148558163 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X4 [Jatropha curcas]
12 Hb_006681_020 0.1155532131 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic [Jatropha curcas]
13 Hb_000116_220 0.1162802972 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000749_260 0.1211506308 - - PREDICTED: protochlorophyllide reductase, chloroplastic [Jatropha curcas]
15 Hb_000711_030 0.1290269022 - - hypothetical protein POPTR_0019s02860g [Populus trichocarpa]
16 Hb_003581_230 0.1314514164 - - PREDICTED: LOW QUALITY PROTEIN: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
17 Hb_000061_250 0.1339486552 - - hypothetical protein JCGZ_11665 [Jatropha curcas]
18 Hb_003416_020 0.1347602404 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
19 Hb_000544_080 0.1347630542 - - PREDICTED: uncharacterized protein LOC105631062 isoform X3 [Jatropha curcas]
20 Hb_000283_030 0.1353838271 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA16-like [Populus euphratica]

Gene co-expression network

sample Hb_000134_040 Hb_000134_040 Hb_002495_090 Hb_002495_090 Hb_000134_040--Hb_002495_090 Hb_004855_070 Hb_004855_070 Hb_000134_040--Hb_004855_070 Hb_009838_070 Hb_009838_070 Hb_000134_040--Hb_009838_070 Hb_007479_010 Hb_007479_010 Hb_000134_040--Hb_007479_010 Hb_003680_060 Hb_003680_060 Hb_000134_040--Hb_003680_060 Hb_000327_260 Hb_000327_260 Hb_000134_040--Hb_000327_260 Hb_137216_010 Hb_137216_010 Hb_002495_090--Hb_137216_010 Hb_000768_120 Hb_000768_120 Hb_002495_090--Hb_000768_120 Hb_002495_090--Hb_007479_010 Hb_006681_020 Hb_006681_020 Hb_002495_090--Hb_006681_020 Hb_005488_190 Hb_005488_190 Hb_002495_090--Hb_005488_190 Hb_004855_070--Hb_006681_020 Hb_004855_070--Hb_000768_120 Hb_004208_090 Hb_004208_090 Hb_004855_070--Hb_004208_090 Hb_006583_030 Hb_006583_030 Hb_004855_070--Hb_006583_030 Hb_001999_260 Hb_001999_260 Hb_004855_070--Hb_001999_260 Hb_004650_050 Hb_004650_050 Hb_009838_070--Hb_004650_050 Hb_009838_070--Hb_000327_260 Hb_009393_130 Hb_009393_130 Hb_009838_070--Hb_009393_130 Hb_009838_070--Hb_003680_060 Hb_000711_030 Hb_000711_030 Hb_009838_070--Hb_000711_030 Hb_004096_210 Hb_004096_210 Hb_009838_070--Hb_004096_210 Hb_007479_010--Hb_000768_120 Hb_007479_010--Hb_004855_070 Hb_007479_010--Hb_006681_020 Hb_000932_110 Hb_000932_110 Hb_007479_010--Hb_000932_110 Hb_003680_060--Hb_009393_130 Hb_000116_220 Hb_000116_220 Hb_003680_060--Hb_000116_220 Hb_003680_060--Hb_004650_050 Hb_091433_050 Hb_091433_050 Hb_003680_060--Hb_091433_050 Hb_003680_060--Hb_000711_030 Hb_000539_040 Hb_000539_040 Hb_000327_260--Hb_000539_040 Hb_000327_260--Hb_009393_130 Hb_000327_260--Hb_000116_220 Hb_000327_260--Hb_004096_210 Hb_000832_270 Hb_000832_270 Hb_000327_260--Hb_000832_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.36094 11.522 102.007 41.6154 6.93919 2.99533
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.32702 3.68563 1.35458 4.82423 86.616

CAGE analysis