Hb_007479_010

Information

Type -
Description -
Location Contig7479: 17174-24153
Sequence    

Annotation

kegg
ID rcu:RCOM_0212780
description Root phototropism protein, putative
nr
ID XP_002531260.1
description Root phototropism protein, putative [Ricinus communis]
swissprot
ID Q9LFU0
description BTB/POZ domain-containing protein DOT3 OS=Arabidopsis thaliana GN=DOT3 PE=2 SV=1
trembl
ID B9SZ41
description Root phototropism protein, putative OS=Ricinus communis GN=RCOM_0212780 PE=4 SV=1
Gene Ontology
ID GO:0010087
description btb poz domain-containing protein dot3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56721: 17252-19011 , PASA_asmbl_56722: 19799-23814
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007479_010 0.0 - - Root phototropism protein, putative [Ricinus communis]
2 Hb_000768_120 0.0825048992 - - PREDICTED: RNA polymerase sigma factor sigB [Jatropha curcas]
3 Hb_002495_090 0.0902909292 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
4 Hb_000134_040 0.0985614877 - - PREDICTED: 30S ribosomal protein 2, chloroplastic [Jatropha curcas]
5 Hb_004855_070 0.1088468246 - - PLASTID-SPECIFIC RIBOSOMAL protein 4 [Populus trichocarpa]
6 Hb_006681_020 0.1112350837 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic [Jatropha curcas]
7 Hb_000932_110 0.1167517756 - - Root phototropism protein, putative [Ricinus communis]
8 Hb_137216_010 0.1237448982 - - PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like isoform X2 [Citrus sinensis]
9 Hb_004208_090 0.1295872338 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
10 Hb_000974_040 0.1323934764 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Jatropha curcas]
11 Hb_001999_260 0.1335179368 - - PREDICTED: 50S ribosomal protein L4, chloroplastic [Jatropha curcas]
12 Hb_005488_190 0.1370759753 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
13 Hb_006583_030 0.1374228271 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X4 [Jatropha curcas]
14 Hb_004007_170 0.1425555177 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
15 Hb_004117_150 0.14354775 - - PREDICTED: uncharacterized protein LOC105649105 [Jatropha curcas]
16 Hb_004447_050 0.1441242203 - - PREDICTED: high-light-induced protein, chloroplastic [Jatropha curcas]
17 Hb_002540_060 0.1456884164 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
18 Hb_000028_150 0.145938367 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
19 Hb_028227_060 0.1480052367 - - PREDICTED: non-specific lipid transfer protein GPI-anchored 1-like [Populus euphratica]
20 Hb_000544_080 0.1480641516 - - PREDICTED: uncharacterized protein LOC105631062 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_007479_010 Hb_007479_010 Hb_000768_120 Hb_000768_120 Hb_007479_010--Hb_000768_120 Hb_002495_090 Hb_002495_090 Hb_007479_010--Hb_002495_090 Hb_000134_040 Hb_000134_040 Hb_007479_010--Hb_000134_040 Hb_004855_070 Hb_004855_070 Hb_007479_010--Hb_004855_070 Hb_006681_020 Hb_006681_020 Hb_007479_010--Hb_006681_020 Hb_000932_110 Hb_000932_110 Hb_007479_010--Hb_000932_110 Hb_000768_120--Hb_006681_020 Hb_000768_120--Hb_004855_070 Hb_000768_120--Hb_002495_090 Hb_004208_090 Hb_004208_090 Hb_000768_120--Hb_004208_090 Hb_001999_260 Hb_001999_260 Hb_000768_120--Hb_001999_260 Hb_137216_010 Hb_137216_010 Hb_002495_090--Hb_137216_010 Hb_002495_090--Hb_000134_040 Hb_002495_090--Hb_006681_020 Hb_005488_190 Hb_005488_190 Hb_002495_090--Hb_005488_190 Hb_000134_040--Hb_004855_070 Hb_009838_070 Hb_009838_070 Hb_000134_040--Hb_009838_070 Hb_003680_060 Hb_003680_060 Hb_000134_040--Hb_003680_060 Hb_000327_260 Hb_000327_260 Hb_000134_040--Hb_000327_260 Hb_004855_070--Hb_006681_020 Hb_004855_070--Hb_004208_090 Hb_006583_030 Hb_006583_030 Hb_004855_070--Hb_006583_030 Hb_004855_070--Hb_001999_260 Hb_006681_020--Hb_001999_260 Hb_006681_020--Hb_006583_030 Hb_004117_150 Hb_004117_150 Hb_006681_020--Hb_004117_150 Hb_000009_510 Hb_000009_510 Hb_006681_020--Hb_000009_510 Hb_001140_190 Hb_001140_190 Hb_000932_110--Hb_001140_190 Hb_018133_070 Hb_018133_070 Hb_000932_110--Hb_018133_070 Hb_003581_230 Hb_003581_230 Hb_000932_110--Hb_003581_230 Hb_000438_160 Hb_000438_160 Hb_000932_110--Hb_000438_160 Hb_029576_060 Hb_029576_060 Hb_000932_110--Hb_029576_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.28987 1.34248 25.5302 7.71193 1.2864 1.08812
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.209867 0.678857 0.312881 0.438091 17.0072

CAGE analysis