Hb_000932_110

Information

Type -
Description -
Location Contig932: 118843-123940
Sequence    

Annotation

kegg
ID rcu:RCOM_0212780
description Root phototropism protein, putative
nr
ID XP_002531260.1
description Root phototropism protein, putative [Ricinus communis]
swissprot
ID Q9LFU0
description BTB/POZ domain-containing protein DOT3 OS=Arabidopsis thaliana GN=DOT3 PE=2 SV=1
trembl
ID B9SZ41
description Root phototropism protein, putative OS=Ricinus communis GN=RCOM_0212780 PE=4 SV=1
Gene Ontology
ID GO:0010087
description btb poz domain-containing protein dot3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62868: 121345-122008 , PASA_asmbl_62869: 122156-123114 , PASA_asmbl_62870: 122251-122968 , PASA_asmbl_62871: 122359-122637
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000932_110 0.0 - - Root phototropism protein, putative [Ricinus communis]
2 Hb_007479_010 0.1167517756 - - Root phototropism protein, putative [Ricinus communis]
3 Hb_001140_190 0.1327462926 - - PREDICTED: A-kinase anchor protein 9 [Jatropha curcas]
4 Hb_018133_070 0.1373699032 - - PREDICTED: RING-H2 finger protein ATL43 [Jatropha curcas]
5 Hb_003581_230 0.1383669594 - - PREDICTED: LOW QUALITY PROTEIN: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
6 Hb_000438_160 0.1401725185 - - conserved hypothetical protein [Ricinus communis]
7 Hb_029576_060 0.1455455029 - - PREDICTED: uncharacterized protein LOC105646366 [Jatropha curcas]
8 Hb_001266_150 0.146350749 - - hypothetical protein JCGZ_14961 [Jatropha curcas]
9 Hb_000925_150 0.1514551132 - - PREDICTED: aluminum-activated malate transporter 8-like [Jatropha curcas]
10 Hb_000352_010 0.1577381158 - - PREDICTED: nudix hydrolase 13, mitochondrial [Jatropha curcas]
11 Hb_059567_010 0.1596629879 - - PREDICTED: transcription factor PAR2-like [Jatropha curcas]
12 Hb_002374_470 0.1610896448 - - PREDICTED: filament-like plant protein isoform X2 [Jatropha curcas]
13 Hb_000134_040 0.1614896085 - - PREDICTED: 30S ribosomal protein 2, chloroplastic [Jatropha curcas]
14 Hb_001729_030 0.1652283199 - - hypothetical protein VITISV_044457 [Vitis vinifera]
15 Hb_004447_050 0.1690925752 - - PREDICTED: high-light-induced protein, chloroplastic [Jatropha curcas]
16 Hb_010288_030 0.1696466928 - - PREDICTED: uncharacterized protein LOC105642607 [Jatropha curcas]
17 Hb_165101_010 0.1698096791 - - PREDICTED: putative wall-associated receptor kinase-like 16 [Nelumbo nucifera]
18 Hb_002495_090 0.1734634038 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
19 Hb_000465_410 0.1737209003 - - conserved hypothetical protein [Ricinus communis]
20 Hb_089966_010 0.174196807 - - -

Gene co-expression network

sample Hb_000932_110 Hb_000932_110 Hb_007479_010 Hb_007479_010 Hb_000932_110--Hb_007479_010 Hb_001140_190 Hb_001140_190 Hb_000932_110--Hb_001140_190 Hb_018133_070 Hb_018133_070 Hb_000932_110--Hb_018133_070 Hb_003581_230 Hb_003581_230 Hb_000932_110--Hb_003581_230 Hb_000438_160 Hb_000438_160 Hb_000932_110--Hb_000438_160 Hb_029576_060 Hb_029576_060 Hb_000932_110--Hb_029576_060 Hb_000768_120 Hb_000768_120 Hb_007479_010--Hb_000768_120 Hb_002495_090 Hb_002495_090 Hb_007479_010--Hb_002495_090 Hb_000134_040 Hb_000134_040 Hb_007479_010--Hb_000134_040 Hb_004855_070 Hb_004855_070 Hb_007479_010--Hb_004855_070 Hb_006681_020 Hb_006681_020 Hb_007479_010--Hb_006681_020 Hb_001511_210 Hb_001511_210 Hb_001140_190--Hb_001511_210 Hb_001140_190--Hb_000438_160 Hb_005276_140 Hb_005276_140 Hb_001140_190--Hb_005276_140 Hb_000071_060 Hb_000071_060 Hb_001140_190--Hb_000071_060 Hb_000331_170 Hb_000331_170 Hb_001140_190--Hb_000331_170 Hb_001817_040 Hb_001817_040 Hb_001140_190--Hb_001817_040 Hb_006133_020 Hb_006133_020 Hb_018133_070--Hb_006133_020 Hb_010683_030 Hb_010683_030 Hb_018133_070--Hb_010683_030 Hb_000032_360 Hb_000032_360 Hb_018133_070--Hb_000032_360 Hb_000925_150 Hb_000925_150 Hb_018133_070--Hb_000925_150 Hb_003020_190 Hb_003020_190 Hb_018133_070--Hb_003020_190 Hb_047659_010 Hb_047659_010 Hb_018133_070--Hb_047659_010 Hb_004220_010 Hb_004220_010 Hb_003581_230--Hb_004220_010 Hb_003581_230--Hb_029576_060 Hb_001148_110 Hb_001148_110 Hb_003581_230--Hb_001148_110 Hb_000976_400 Hb_000976_400 Hb_003581_230--Hb_000976_400 Hb_003581_230--Hb_000032_360 Hb_001439_080 Hb_001439_080 Hb_003581_230--Hb_001439_080 Hb_000017_200 Hb_000017_200 Hb_000438_160--Hb_000017_200 Hb_000438_160--Hb_000331_170 Hb_000438_160--Hb_000071_060 Hb_001491_020 Hb_001491_020 Hb_000438_160--Hb_001491_020 Hb_002276_220 Hb_002276_220 Hb_029576_060--Hb_002276_220 Hb_000163_190 Hb_000163_190 Hb_029576_060--Hb_000163_190 Hb_034235_010 Hb_034235_010 Hb_029576_060--Hb_034235_010 Hb_000608_270 Hb_000608_270 Hb_029576_060--Hb_000608_270 Hb_002704_060 Hb_002704_060 Hb_029576_060--Hb_002704_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.62988 1.53044 89.1646 43.8675 4.60107 4.07744
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.963235 2.3661 1.22566 1.01524 46.789

CAGE analysis